6f45

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'''Unreleased structure'''
 
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The entry 6f45 is ON HOLD until Paper Publication
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==Crystal structure of the gp37-gp38 adhesin tip complex of the bacteriophage S16 long tail fiber==
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<StructureSection load='6f45' size='340' side='right'caption='[[6f45]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6f45]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_vB_SenM-S16 Salmonella phage vB_SenM-S16]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6F45 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7035582&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6f45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f45 OCA], [https://pdbe.org/6f45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6f45 RCSB], [https://www.ebi.ac.uk/pdbsum/6f45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6f45 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/M1EBB2_BPS16 M1EBB2_BPS16] Vg38 is at the tip of the long tail fibers and serves as the phage recognition site for the cellular receptor.[ARBA:ARBA00003549]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The ability of phages to infect specific bacteria has led to their exploitation as bio-tools for bacterial remediation and detection. Many phages recognize bacterial hosts via adhesin tips of their long tail fibers (LTFs). Adhesin sequence plasticity modulates receptor specificity, and thus primarily defines a phage's host range. Here we present the crystal structure of an adhesin (gp38) attached to a trimeric beta-helical tip (gp37) from the Salmonella phage S16 LTF. Gp38 contains rare polyglycine type II helices folded into a packed lattice, herein designated "PGII sandwich." Sequence variability within the domain is limited to surface-exposed helices and distal loops that form putative receptor-binding sites. In silico analyses revealed a prevalence of the adhesin architecture among T-even phages, excluding the archetypal T4 phage. Overall, S16 LTF provides a valuable model for understanding binding mechanisms of phage adhesins, and for engineering of phage adhesins with expandable or modulated host ranges.
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Authors: Dunne, M., Leiman, P., Klumpp, J., Loessner, M.J.
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Salmonella Phage S16 Tail Fiber Adhesin Features a Rare Polyglycine Rich Domain for Host Recognition.,Dunne M, Denyes JM, Arndt H, Loessner MJ, Leiman PG, Klumpp J Structure. 2018 Aug 16. pii: S0969-2126(18)30263-6. doi:, 10.1016/j.str.2018.07.017. PMID:30244968<ref>PMID:30244968</ref>
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Description: Crystal structure of the gp37-gp38 adhesin tip complex of the bacteriophage S16 long tail fiber
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Dunne, M]]
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<div class="pdbe-citations 6f45" style="background-color:#fffaf0;"></div>
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[[Category: Klumpp, J]]
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== References ==
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[[Category: Loessner, M.J]]
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<references/>
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[[Category: Leiman, P]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Salmonella phage vB_SenM-S16]]
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[[Category: Dunne M]]
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[[Category: Klumpp J]]
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[[Category: Leiman P]]
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[[Category: Loessner MJ]]

Current revision

Crystal structure of the gp37-gp38 adhesin tip complex of the bacteriophage S16 long tail fiber

PDB ID 6f45

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