This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1usz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:19, 9 May 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==SEMET AFAE-3 ADHESIN FROM ESCHERICHIA COLI==
+
 
-
<StructureSection load='1usz' size='340' side='right' caption='[[1usz]], [[Resolution|resolution]] 3.28&Aring;' scene=''>
+
==SeMet AfaE-3 adhesin from Escherichia Coli==
 +
<StructureSection load='1usz' size='340' side='right'caption='[[1usz]], [[Resolution|resolution]] 3.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1usz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1USZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1USZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1usz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1USZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1USZ FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.28&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1usq|1usq]], [[1ut2|1ut2]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1usz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1usz OCA], [https://pdbe.org/1usz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1usz RCSB], [https://www.ebi.ac.uk/pdbsum/1usz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1usz ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1usz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1usz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1usz RCSB], [http://www.ebi.ac.uk/pdbsum/1usz PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/AFAE3_ECOLX AFAE3_ECOLX] Hemagglutinins of uropathogenic E.coli mediate adherence to the upper urinary tract. These adhesins bind to the Dr blood group antigen and also agglutinate human erythrocytes in the presence of D-mannose (mannose-resistant hemagglutination (MRHA)).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/us/1usz_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/us/1usz_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1usz ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1usz" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 31: Line 34:
</StructureSection>
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Anderson, K L.]]
+
[[Category: Large Structures]]
-
[[Category: Barlow, P.]]
+
[[Category: Anderson KL]]
-
[[Category: Billington, J.]]
+
[[Category: Barlow P]]
-
[[Category: Bouguenec, C Le.]]
+
[[Category: Billington J]]
-
[[Category: Chen, H A.]]
+
[[Category: Chen HA]]
-
[[Category: Cota, E.]]
+
[[Category: Cota E]]
-
[[Category: Dumerle, L.]]
+
[[Category: Dumerle L]]
-
[[Category: Lea, S M.]]
+
[[Category: Le Bouguenec C]]
-
[[Category: Matthews, S.]]
+
[[Category: Lea SM]]
-
[[Category: Medof, E.]]
+
[[Category: Matthews S]]
-
[[Category: Nowicki, B.]]
+
[[Category: Medof E]]
-
[[Category: Pettigrew, D.]]
+
[[Category: Nowicki B]]
-
[[Category: Roversi, P.]]
+
[[Category: Pettigrew D]]
-
[[Category: Simpson, P.]]
+
[[Category: Roversi P]]
-
[[Category: Smith, R A.G.]]
+
[[Category: Simpson P]]
-
[[Category: Urvil, P.]]
+
[[Category: Smith RAG]]
-
[[Category: Adhesin]]
+
[[Category: Urvil P]]
-
[[Category: Afae-3]]
+
-
[[Category: Afimbrial adhesin]]
+
-
[[Category: Daec]]
+
-
[[Category: Upec]]
+

Current revision

SeMet AfaE-3 adhesin from Escherichia Coli

PDB ID 1usz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1usz"
Personal tools