This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1whw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:40, 9 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1whw.jpg|left|200px]]
 
-
{{Structure
+
==Solution structure of the N-terminal RNA binding domain from hypothetical protein BAB23448==
-
|PDB= 1whw |SIZE=350|CAPTION= <scene name='initialview01'>1whw</scene>
+
<StructureSection load='1whw' size='340' side='right'caption='[[1whw]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1whw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WHW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WHW FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= RIKEN CDNA 1200009A02 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1whw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1whw OCA], [https://pdbe.org/1whw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1whw RCSB], [https://www.ebi.ac.uk/pdbsum/1whw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1whw ProSAT], [https://www.topsan.org/Proteins/RSGI/1whw TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1whw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1whw OCA], [http://www.ebi.ac.uk/pdbsum/1whw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1whw RCSB]</span>
+
[https://www.uniprot.org/uniprot/RBM19_MOUSE RBM19_MOUSE] Plays a role in embryo pre-implantation development.<ref>PMID:19087264</ref>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Solution structure of the N-terminal RNA binding domain from hypothetical protein BAB23448'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wh/1whw_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1WHW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WHW OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1whw ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Single protein]]
+
[[Category: Inoue M]]
-
[[Category: Inoue, M.]]
+
[[Category: Kigawa T]]
-
[[Category: Kigawa, T.]]
+
[[Category: Muto Y]]
-
[[Category: Muto, Y.]]
+
[[Category: Nagata T]]
-
[[Category: Nagata, T.]]
+
[[Category: Shirouzu M]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Terada T]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Yokoyama S]]
-
[[Category: Terada, T.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: rbd]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rna binding domain]]
+
-
[[Category: rna recognition motif]]
+
-
[[Category: rnp]]
+
-
[[Category: rrm]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:36:31 2008''
+

Current revision

Solution structure of the N-terminal RNA binding domain from hypothetical protein BAB23448

PDB ID 1whw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools