This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wif

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:41, 9 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The solution structure of RSGI RUH-020, a PDZ domain of hypothetical protein from mouse==
==The solution structure of RSGI RUH-020, a PDZ domain of hypothetical protein from mouse==
-
<StructureSection load='1wif' size='340' side='right' caption='[[1wif]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='1wif' size='340' side='right'caption='[[1wif]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1wif]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1wif]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WIF FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wif OCA], [http://pdbe.org/1wif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wif RCSB], [http://www.ebi.ac.uk/pdbsum/1wif PDBsum], [http://www.topsan.org/Proteins/RSGI/1wif TOPSAN]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wif OCA], [https://pdbe.org/1wif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wif RCSB], [https://www.ebi.ac.uk/pdbsum/1wif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wif ProSAT], [https://www.topsan.org/Proteins/RSGI/1wif TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PDZD9_MOUSE PDZD9_MOUSE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wif_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wif_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 17: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Hirota, H]]
+
[[Category: Mus musculus]]
-
[[Category: Kigawa, T]]
+
[[Category: Hirota H]]
-
[[Category: Koshiba, S]]
+
[[Category: Kigawa T]]
-
[[Category: Ohashi, W]]
+
[[Category: Koshiba S]]
-
[[Category: Structural genomic]]
+
[[Category: Ohashi W]]
-
[[Category: Tomizawa, T]]
+
[[Category: Tomizawa T]]
-
[[Category: Yamazaki, T]]
+
[[Category: Yamazaki T]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Mouse cdna]]
+
-
[[Category: Pdz domain]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Unknown function]]
+

Current revision

The solution structure of RSGI RUH-020, a PDZ domain of hypothetical protein from mouse

PDB ID 1wif

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools