This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wot

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:46, 9 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1wot.png|left|200px]]
 
-
<!--
+
==Structure of putative minimal nucleotidyltransferase==
-
The line below this paragraph, containing "STRUCTURE_1wot", creates the "Structure Box" on the page.
+
<StructureSection load='1wot' size='340' side='right'caption='[[1wot]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wot]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j0l 1j0l]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WOT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wot OCA], [https://pdbe.org/1wot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wot RCSB], [https://www.ebi.ac.uk/pdbsum/1wot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wot ProSAT], [https://www.topsan.org/Proteins/RSGI/1wot TOPSAN]</span></td></tr>
-
{{STRUCTURE_1wot| PDB=1wot | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Structure of putative minimal nucleotidyltransferase===
+
[https://www.uniprot.org/uniprot/P83814_THETH P83814_THETH]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1WOT is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j0l 1j0l]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WOT OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wo/1wot_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wot ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Hatanaka, H.]]
+
[[Category: Hatanaka H]]
-
[[Category: Hondoh, T.]]
+
[[Category: Hondoh T]]
-
[[Category: Inoue, Y.]]
+
[[Category: Inoue Y]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kuroda, Y.]]
+
[[Category: Kuroda Y]]
-
[[Category: Okumura, A.]]
+
[[Category: Okumura A]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Shibata T]]
-
[[Category: Shibata, T.]]
+
[[Category: Suzuki S]]
-
[[Category: Suzuki, S.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Alpha and beta]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 09:56:24 2008''
+

Current revision

Structure of putative minimal nucleotidyltransferase

PDB ID 1wot

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools