This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1wot
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1wot" size="450" color="white" frame="true" align="right" spinBox="true" caption="1wot" /> '''Structure of putative minimal nucleotidyltra...) |
|||
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1wot.jpg|left|200px]]<br /><applet load="1wot" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1wot" /> | ||
| - | '''Structure of putative minimal nucleotidyltransferase'''<br /> | ||
| - | == | + | ==Structure of putative minimal nucleotidyltransferase== |
| - | + | <StructureSection load='1wot' size='340' side='right'caption='[[1wot]]' scene=''> | |
| - | [[Category: | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[1wot]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j0l 1j0l]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WOT FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wot OCA], [https://pdbe.org/1wot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wot RCSB], [https://www.ebi.ac.uk/pdbsum/1wot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wot ProSAT], [https://www.topsan.org/Proteins/RSGI/1wot TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/P83814_THETH P83814_THETH] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wo/1wot_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wot ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Thermus thermophilus]] | [[Category: Thermus thermophilus]] | ||
| - | [[Category: Hatanaka | + | [[Category: Hatanaka H]] |
| - | [[Category: Hondoh | + | [[Category: Hondoh T]] |
| - | [[Category: Inoue | + | [[Category: Inoue Y]] |
| - | [[Category: Kuramitsu | + | [[Category: Kuramitsu S]] |
| - | [[Category: Kuroda | + | [[Category: Kuroda Y]] |
| - | [[Category: Okumura | + | [[Category: Okumura A]] |
| - | + | [[Category: Shibata T]] | |
| - | [[Category: Shibata | + | [[Category: Suzuki S]] |
| - | [[Category: Suzuki | + | [[Category: Yokoyama S]] |
| - | [[Category: Yokoyama | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of putative minimal nucleotidyltransferase
| |||||||||||
Categories: Large Structures | Thermus thermophilus | Hatanaka H | Hondoh T | Inoue Y | Kuramitsu S | Kuroda Y | Okumura A | Shibata T | Suzuki S | Yokoyama S
