This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1x0r
From Proteopedia
(Difference between revisions)
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1x0r.gif|left|200px]]<br /><applet load="1x0r" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1x0r, resolution 2.00Å" /> | ||
| - | '''Thioredoxin Peroxidase from Aeropyrum pernix K1'''<br /> | ||
| - | == | + | ==Thioredoxin Peroxidase from Aeropyrum pernix K1== |
| - | + | <StructureSection load='1x0r' size='340' side='right'caption='[[1x0r]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[1x0r]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0R FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | |
| - | [[Category: Aeropyrum pernix]] | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0r OCA], [https://pdbe.org/1x0r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0r RCSB], [https://www.ebi.ac.uk/pdbsum/1x0r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0r ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | [[Category: Ataka | + | == Function == |
| - | [[Category: Hagihara | + | [https://www.uniprot.org/uniprot/TDXH_AERPE TDXH_AERPE] |
| - | [[Category: Inoue | + | == Evolutionary Conservation == |
| - | [[Category: Ishikawa | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Kai | + | Check<jmol> |
| - | [[Category: Kobayashi | + | <jmolCheckbox> |
| - | [[Category: Matsumura | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x0/1x0r_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Nakamura | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Uegaki | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Yamamoto | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x0r ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Aeropyrum pernix K1]] | |
| + | [[Category: Large Structures]] | ||
| + | [[Category: Ataka M]] | ||
| + | [[Category: Hagihara Y]] | ||
| + | [[Category: Inoue T]] | ||
| + | [[Category: Ishikawa K]] | ||
| + | [[Category: Kai Y]] | ||
| + | [[Category: Kobayashi A]] | ||
| + | [[Category: Matsumura H]] | ||
| + | [[Category: Nakamura T]] | ||
| + | [[Category: Uegaki K]] | ||
| + | [[Category: Yamamoto T]] | ||
Current revision
Thioredoxin Peroxidase from Aeropyrum pernix K1
| |||||||||||
Categories: Aeropyrum pernix K1 | Large Structures | Ataka M | Hagihara Y | Inoue T | Ishikawa K | Kai Y | Kobayashi A | Matsumura H | Nakamura T | Uegaki K | Yamamoto T
