This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1x0r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:55, 9 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x0r.gif|left|200px]]
 
-
{{Structure
+
==Thioredoxin Peroxidase from Aeropyrum pernix K1==
-
|PDB= 1x0r |SIZE=350|CAPTION= <scene name='initialview01'>1x0r</scene>, resolution 2.00&Aring;
+
<StructureSection load='1x0r' size='340' side='right'caption='[[1x0r]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[1x0r]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0R FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= APE2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0r OCA], [https://pdbe.org/1x0r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0r RCSB], [https://www.ebi.ac.uk/pdbsum/1x0r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0r ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0r OCA], [http://www.ebi.ac.uk/pdbsum/1x0r PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1x0r RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/TDXH_AERPE TDXH_AERPE]
-
 
+
== Evolutionary Conservation ==
-
'''Thioredoxin Peroxidase from Aeropyrum pernix K1'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x0/1x0r_consurf.spt"</scriptWhenChecked>
-
1X0R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0R OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1., Nakamura T, Yamamoto T, Inoue T, Matsumura H, Kobayashi A, Hagihara Y, Uegaki K, Ataka M, Kai Y, Ishikawa K, Proteins. 2006 Mar 15;62(3):822-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16342268 16342268]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x0r ConSurf].
-
[[Category: Aeropyrum pernix]]
+
<div style="clear:both"></div>
-
[[Category: Peroxiredoxin]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: Ataka, M.]]
+
[[Category: Aeropyrum pernix K1]]
-
[[Category: Hagihara, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Inoue, T.]]
+
[[Category: Ataka M]]
-
[[Category: Ishikawa, K.]]
+
[[Category: Hagihara Y]]
-
[[Category: Kai, Y.]]
+
[[Category: Inoue T]]
-
[[Category: Kobayashi, A.]]
+
[[Category: Ishikawa K]]
-
[[Category: Matsumura, H.]]
+
[[Category: Kai Y]]
-
[[Category: Nakamura, T.]]
+
[[Category: Kobayashi A]]
-
[[Category: Uegaki, K.]]
+
[[Category: Matsumura H]]
-
[[Category: Yamamoto, T.]]
+
[[Category: Nakamura T]]
-
[[Category: peroxiredoxin]]
+
[[Category: Uegaki K]]
-
[[Category: thioredoxin fold]]
+
[[Category: Yamamoto T]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:43:26 2008''
+

Current revision

Thioredoxin Peroxidase from Aeropyrum pernix K1

PDB ID 1x0r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1x0r"
Personal tools