This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xe1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1xe1" [edit=sysop:move=sysop])
Current revision (14:06, 9 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xe1.png|left|200px]]
 
-
{{STRUCTURE_1xe1| PDB=1xe1 | SCENE= }}
+
==Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001==
-
 
+
<StructureSection load='1xe1' size='340' side='right'caption='[[1xe1]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1xe1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XE1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XE1 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[1xe1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XE1 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xe1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xe1 OCA], [https://pdbe.org/1xe1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xe1 RCSB], [https://www.ebi.ac.uk/pdbsum/1xe1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xe1 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xe1 TOPSAN]</span></td></tr>
-
[[Category: Pyrococcus furiosus]]
+
</table>
-
[[Category: Chang, J C.]]
+
== Function ==
-
[[Category: Chen, L.]]
+
[https://www.uniprot.org/uniprot/Q8U2D2_PYRFU Q8U2D2_PYRFU]
-
[[Category: Habel, J E.]]
+
== Evolutionary Conservation ==
-
[[Category: III, W B.Arendall.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Lee, D.]]
+
Check<jmol>
-
[[Category: Liu, Z J.]]
+
<jmolCheckbox>
-
[[Category: Richardson, D C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xe1_consurf.spt"</scriptWhenChecked>
-
[[Category: Richardson, J S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rose, J P.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Tempel, W.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xe1 ConSurf].
-
[[Category: Wang, B C.]]
+
<div style="clear:both"></div>
-
[[Category: Zhao, M.]]
+
__TOC__
-
[[Category: Zhou, W.]]
+
</StructureSection>
-
[[Category: Conserved hypothetical protein]]
+
[[Category: Large Structures]]
-
[[Category: Hyperthermophile]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Secsg]]
+
[[Category: Arendall III WB]]
-
[[Category: Southeast collaboratory for structural genomic]]
+
[[Category: Chang JC]]
-
[[Category: Structural genomic]]
+
[[Category: Chen L]]
-
[[Category: Unknown function]]
+
[[Category: Habel JE]]
 +
[[Category: Lee D]]
 +
[[Category: Liu ZJ]]
 +
[[Category: Richardson DC]]
 +
[[Category: Richardson JS]]
 +
[[Category: Rose JP]]
 +
[[Category: Tempel W]]
 +
[[Category: Wang BC]]
 +
[[Category: Zhao M]]
 +
[[Category: Zhou W]]

Current revision

Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001

PDB ID 1xe1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools