This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1xe1
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:1xe1.png|left|200px]] | ||
| - | + | ==Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001== | |
| - | + | <StructureSection load='1xe1' size='340' side='right'caption='[[1xe1]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1xe1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XE1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XE1 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xe1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xe1 OCA], [https://pdbe.org/1xe1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xe1 RCSB], [https://www.ebi.ac.uk/pdbsum/1xe1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xe1 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xe1 TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q8U2D2_PYRFU Q8U2D2_PYRFU] | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xe1_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xe1 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Pyrococcus furiosus]] | [[Category: Pyrococcus furiosus]] | ||
| - | [[Category: | + | [[Category: Arendall III WB]] |
| - | [[Category: | + | [[Category: Chang JC]] |
| - | [[Category: | + | [[Category: Chen L]] |
| - | [[Category: | + | [[Category: Habel JE]] |
| - | [[Category: Lee | + | [[Category: Lee D]] |
| - | [[Category: Liu | + | [[Category: Liu ZJ]] |
| - | [[Category: Richardson | + | [[Category: Richardson DC]] |
| - | [[Category: Richardson | + | [[Category: Richardson JS]] |
| - | [[Category: Rose | + | [[Category: Rose JP]] |
| - | + | [[Category: Tempel W]] | |
| - | [[Category: Tempel | + | [[Category: Wang BC]] |
| - | [[Category: Wang | + | [[Category: Zhao M]] |
| - | [[Category: Zhao | + | [[Category: Zhou W]] |
| - | [[Category: Zhou | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001
| |||||||||||
Categories: Large Structures | Pyrococcus furiosus | Arendall III WB | Chang JC | Chen L | Habel JE | Lee D | Liu ZJ | Richardson DC | Richardson JS | Rose JP | Tempel W | Wang BC | Zhao M | Zhou W

