This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xkn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1xkn" size="450" color="white" frame="true" align="right" spinBox="true" caption="1xkn, resolution 1.60&Aring;" /> '''Crystal Structure of...)
Current revision (14:11, 9 May 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xkn.jpg|left|200px]]<br /><applet load="1xkn" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1xkn, resolution 1.60&Aring;" />
 
-
'''Crystal Structure of the Putative Peptidyl-arginine Deiminase from Chlorobium tepidum, NESG Target CtR21'''<br />
 
-
==About this Structure==
+
==Crystal Structure of the Putative Peptidyl-arginine Deiminase from Chlorobium tepidum, NESG Target CtR21==
-
1XKN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum] with NA and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1XKN OCA].
+
<StructureSection load='1xkn' size='340' side='right'caption='[[1xkn]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
[[Category: Chlorobaculum tepidum]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1xkn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum_TLS Chlorobaculum tepidum TLS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XKN FirstGlance]. <br>
-
[[Category: Acton, T.B.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
[[Category: Befeler, A.R.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Ciano, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xkn OCA], [https://pdbe.org/1xkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xkn RCSB], [https://www.ebi.ac.uk/pdbsum/1xkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xkn ProSAT], [https://www.topsan.org/Proteins/NESGC/1xkn TOPSAN]</span></td></tr>
-
[[Category: Forouhar, F.]]
+
</table>
-
[[Category: Hunt, J.F.]]
+
== Function ==
-
[[Category: Hussain, M.]]
+
[https://www.uniprot.org/uniprot/Q8KCB6_CHLTE Q8KCB6_CHLTE]
-
[[Category: Montelione, G.T.]]
+
== Evolutionary Conservation ==
-
[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Tong, L.]]
+
Check<jmol>
-
[[Category: Vorobiev, S.M.]]
+
<jmolCheckbox>
-
[[Category: CL]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xk/1xkn_consurf.spt"</scriptWhenChecked>
-
[[Category: NA]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: alpha-beta protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: nesg]]
+
</jmolCheckbox>
-
[[Category: northeast structural genomics consortium]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xkn ConSurf].
-
[[Category: protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: psi]]
+
__TOC__
-
[[Category: structural genomics]]
+
</StructureSection>
-
 
+
[[Category: Chlorobaculum tepidum TLS]]
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 02:23:07 2007''
+
[[Category: Large Structures]]
 +
[[Category: Acton TB]]
 +
[[Category: Befeler AR]]
 +
[[Category: Ciano M]]
 +
[[Category: Forouhar F]]
 +
[[Category: Hunt JF]]
 +
[[Category: Hussain M]]
 +
[[Category: Montelione GT]]
 +
[[Category: Tong L]]
 +
[[Category: Vorobiev SM]]

Current revision

Crystal Structure of the Putative Peptidyl-arginine Deiminase from Chlorobium tepidum, NESG Target CtR21

PDB ID 1xkn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools