2l9j

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[[Image:2l9j.jpg|left|200px]]
 
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==hRSV M2-1 core domain structure==
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The line below this paragraph, containing "STRUCTURE_2l9j", creates the "Structure Box" on the page.
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<StructureSection load='2l9j' size='340' side='right'caption='[[2l9j]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2l9j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_orthopneumovirus Human orthopneumovirus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L9J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l9j OCA], [https://pdbe.org/2l9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l9j RCSB], [https://www.ebi.ac.uk/pdbsum/2l9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l9j ProSAT]</span></td></tr>
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{{STRUCTURE_2l9j| PDB=2l9j | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/M21_HRSVA M21_HRSVA] Acts as a transcriptional elongation factor to prevent premature termination during transcription thus allowing complete synthesis of RSV mRNAs. Functions also as a processivity and antitermination factor to permit transit of the polymerase through intergenic regions to access promoter distal genes. Plays a role in the association of the matrix protein with the nucleocapsid, which initiates assembly and budding. Also, can activate NF-kappa-B through association with host RELA.<ref>PMID:8552680</ref> <ref>PMID:9420254</ref> <ref>PMID:10364337</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Respiratory syncytial virus (RSV) protein M2-1 functions as an essential transcriptional cofactor of the viral RNA-dependent RNA polymerase (RdRp) complex by increasing polymerase processivity. M2-1 is a modular RNA binding protein that also interacts with the viral phosphoprotein P, another component of the RdRp complex. These binding properties are related to the core region of M2-1 encompassing residues S58 to K177. Here we report the NMR structure of the RSV M2-1(58-177) core domain, which is structurally homologous to the C-terminal domain of Ebola virus VP30, a transcription co-factor sharing functional similarity with M2-1. The partial overlap of RNA and P interaction surfaces on M2-1(58-177), as determined by NMR, rationalizes the previously observed competitive behavior of RNA versus P. Using site-directed mutagenesis, we identified eight residues located on these surfaces that are critical for an efficient transcription activity of the RdRp complex. Single mutations of these residues disrupted specifically either P or RNA binding to M2-1 in vitro. M2-1 recruitment to cytoplasmic inclusion bodies, which are regarded as sites of viral RNA synthesis, was impaired by mutations affecting only binding to P, but not to RNA, suggesting that M2-1 is associated to the holonucleocapsid by interacting with P. These results reveal that RNA and P binding to M2-1 can be uncoupled and that both are critical for the transcriptional antitermination function of M2-1.
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===hRSV M2-1 core domain structure===
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Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein.,Blondot ML, Dubosclard V, Fix J, Lassoued S, Aumont-Nicaise M, Bontems F, Eleouet JF, Sizun C PLoS Pathog. 2012;8(5):e1002734. doi: 10.1371/journal.ppat.1002734. Epub 2012 May, 31. PMID:22675274<ref>PMID:22675274</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2l9j" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[2l9j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_respiratory_syncytial_virus Human respiratory syncytial virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L9J OCA].
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*[[M2 protein|M2 protein]]
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[[Category: Human respiratory syncytial virus]]
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== References ==
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[[Category: Blondot, M.]]
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<references/>
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[[Category: Bontems, F.]]
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__TOC__
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[[Category: Dubosclard, V.]]
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</StructureSection>
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[[Category: Eleouet, J.]]
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[[Category: Human orthopneumovirus]]
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[[Category: Sizun, C.]]
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[[Category: Large Structures]]
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[[Category: Processivity]]
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[[Category: Blondot M]]
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[[Category: Rna binding protein]]
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[[Category: Bontems F]]
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[[Category: Transcription]]
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[[Category: Dubosclard V]]
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[[Category: Transcription co-factor]]
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[[Category: Eleouet J]]
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[[Category: Viral protein]]
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[[Category: Sizun C]]

Current revision

hRSV M2-1 core domain structure

PDB ID 2l9j

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