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2lfv

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Solution Structure of the SPOR domain from E. coli DamX

Structural highlights

2lfv is a 1 chain structure with sequence from Escherichia coli K-12. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DAMX_ECOLI Directly or indirectly interferes with cell division.

Publication Abstract from PubMed

SPOR domains are present in thousands of bacterial proteins and probably bind septal peptidoglycan (PG), but the details of the SPOR-PG interaction have yet to be elucidated. Here we characterize the structure and function of the SPOR domain for an Escherichia coli division protein named DamX. Nuclear magnetic resonance revealed the domain comprises a four-stranded antiparallel beta-sheet buttressed on one side by two alpha-helices. A third helix, designated alpha3, associates with the other face of the beta-sheet, but this helix is relatively mobile. Site-directed mutagenesis revealed the face of the beta-sheet that interacts with alpha3 is important for septal localization and binding to PG sacculi. The position and mobility of alpha3 suggest it might regulate PG binding, but although alpha3 deletion mutants still localized to the septal ring, they were too unstable to use in a PG binding assay. Finally, to assess the importance of the SPOR domain in DamX function, we constructed and characterized E. coli mutants that produced DamX proteins with SPOR domain point mutations or SPOR domain deletions. These studies revealed the SPOR domain is important for multiple activities associated with DamX: targeting the protein to the division site, conferring full resistance to the bile salt deoxycholate, improving the efficiency of cell division when DamX is produced at normal levels, and inhibiting cell division when DamX is overproduced.

Nuclear Magnetic Resonance Solution Structure of the Peptidoglycan-Binding SPOR Domain from Escherichia coli DamX: Insights into Septal Localization.,Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e. Epub 2013 Jan 14. PMID:23290046^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS. Nuclear Magnetic Resonance Solution Structure of the Peptidoglycan-Binding SPOR Domain from Escherichia coli DamX: Insights into Septal Localization. Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e. Epub 2013 Jan 14. PMID:23290046 doi:http://dx.doi.org/10.1021/bi301609e

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2lfv"

@@ Line 1: / Line 1: @@
 ==Solution Structure of the SPOR domain from E. coli DamX==
-<StructureSection load='2lfv' size='340' side='right' caption='[[2lfv]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''>
+<StructureSection load='2lfv' size='340' side='right'caption='[[2lfv]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2lfv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LFV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2lfv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LFV FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b3388, damX, yhfB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lfv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lfv RCSB], [http://www.ebi.ac.uk/pdbsum/2lfv PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lfv OCA], [https://pdbe.org/2lfv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lfv RCSB], [https://www.ebi.ac.uk/pdbsum/2lfv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lfv ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DAMX_ECOLI DAMX_ECOLI] Directly or indirectly interferes with cell division.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2lfv" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Escherichia coli k-12]]
+[[Category: Escherichia coli K-12]]
-[[Category: Arends, S J.R]]
+[[Category: Large Structures]]
-[[Category: Fowler, C A]]
+[[Category: Arends SJR]]
-[[Category: Popham, D L]]
+[[Category: Fowler CA]]
-[[Category: Weiss, D S]]
+[[Category: Popham DL]]
-[[Category: Williams, K B]]
+[[Category: Weiss DS]]
-[[Category: Bacterial cell division protein]]
+[[Category: Williams KB]]
-[[Category: Cell cycle]]
-[[Category: Cell division]]
-[[Category: Murein binding domain]]
-[[Category: Peptidoglycan binding domain]]
-[[Category: Rnp domain]]
-[[Category: Rnp fold]]

2lfv

From Proteopedia

Current revision

Solution Structure of the SPOR domain from E. coli DamX

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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