This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xrg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 15 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Conserved hypothetical protein from Clostridium thermocellum Cth-2968==
==Conserved hypothetical protein from Clostridium thermocellum Cth-2968==
-
<StructureSection load='1xrg' size='340' side='right' caption='[[1xrg]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='1xrg' size='340' side='right'caption='[[1xrg]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xrg]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xrg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRG FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xrg RCSB], [http://www.ebi.ac.uk/pdbsum/1xrg PDBsum], [http://www.topsan.org/Proteins/SECSG/1xrg TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrg OCA], [https://pdbe.org/1xrg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrg RCSB], [https://www.ebi.ac.uk/pdbsum/1xrg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrg ProSAT], [https://www.topsan.org/Proteins/SECSG/1xrg TOPSAN]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A3DJ68_ACET2 A3DJ68_ACET2]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrg_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrg_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xrg ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Clostridium thermocellum]]
+
[[Category: Acetivibrio thermocellus]]
-
[[Category: Chang, J.]]
+
[[Category: Large Structures]]
-
[[Category: Chang, S H.]]
+
[[Category: Arendall III WB]]
-
[[Category: Chen, L.]]
+
[[Category: Chang J]]
-
[[Category: Florence, Q.]]
+
[[Category: Chang S-H]]
-
[[Category: Habel, J.]]
+
[[Category: Chen L]]
-
[[Category: Horanyi, P.]]
+
[[Category: Florence Q]]
-
[[Category: III, W B.Arendall.]]
+
[[Category: Habel J]]
-
[[Category: Kataeva, I.]]
+
[[Category: Horanyi P]]
-
[[Category: Lee, D.]]
+
[[Category: Kataeva I]]
-
[[Category: Lin, D.]]
+
[[Category: Lee D]]
-
[[Category: Liu, Z J.]]
+
[[Category: Lin D]]
-
[[Category: Ljundahl, L.]]
+
[[Category: Liu Z-J]]
-
[[Category: Nguyen, J.]]
+
[[Category: Ljundahl L]]
-
[[Category: Richardson, D C.]]
+
[[Category: Nguyen J]]
-
[[Category: Richardson, J S.]]
+
[[Category: Richardson DC]]
-
[[Category: Rose, J.]]
+
[[Category: Richardson JS]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Rose J]]
-
[[Category: Tempel, W.]]
+
[[Category: Tempel W]]
-
[[Category: Wang, B C.]]
+
[[Category: Wang B-C]]
-
[[Category: Xu, H.]]
+
[[Category: Xu H]]
-
[[Category: Zhang, H.]]
+
[[Category: Zhang H]]
-
[[Category: Zhao, M.]]
+
[[Category: Zhao M]]
-
[[Category: Zhou, W.]]
+
[[Category: Zhou W]]
-
[[Category: Clostridium thermocellum]]
+
-
[[Category: Conserved hypothetical protein]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Secsg]]
+
-
[[Category: Southeast collaboratory for structural genomic]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+

Current revision

Conserved hypothetical protein from Clostridium thermocellum Cth-2968

PDB ID 1xrg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools