This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1xrg
From Proteopedia
(Difference between revisions)
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1xrg.jpg|left|200px]] | ||
| - | + | ==Conserved hypothetical protein from Clostridium thermocellum Cth-2968== | |
| - | + | <StructureSection load='1xrg' size='340' side='right'caption='[[1xrg]], [[Resolution|resolution]] 2.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1xrg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRG FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrg OCA], [https://pdbe.org/1xrg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrg RCSB], [https://www.ebi.ac.uk/pdbsum/1xrg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrg ProSAT], [https://www.topsan.org/Proteins/SECSG/1xrg TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/A3DJ68_ACET2 A3DJ68_ACET2] | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | [[ | + | <jmolCheckbox> |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrg_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xrg ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | [ | + | __TOC__ |
| - | [[ | + | </StructureSection> |
| - | [[Category: | + | [[Category: Acetivibrio thermocellus]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Arendall III WB]] |
| - | [[Category: | + | [[Category: Chang J]] |
| - | [[Category: | + | [[Category: Chang S-H]] |
| - | [[Category: | + | [[Category: Chen L]] |
| - | [[Category: | + | [[Category: Florence Q]] |
| - | [[Category: | + | [[Category: Habel J]] |
| - | [[Category: | + | [[Category: Horanyi P]] |
| - | [[Category: | + | [[Category: Kataeva I]] |
| - | [[Category: | + | [[Category: Lee D]] |
| - | [[Category: | + | [[Category: Lin D]] |
| - | [[Category: | + | [[Category: Liu Z-J]] |
| - | [[Category: | + | [[Category: Ljundahl L]] |
| - | [[Category: | + | [[Category: Nguyen J]] |
| - | [[Category: | + | [[Category: Richardson DC]] |
| - | [[Category: | + | [[Category: Richardson JS]] |
| - | [[Category: | + | [[Category: Rose J]] |
| - | [[Category: | + | [[Category: Tempel W]] |
| - | [[Category: | + | [[Category: Wang B-C]] |
| - | [[Category: | + | [[Category: Xu H]] |
| - | [[Category: | + | [[Category: Zhang H]] |
| - | [[Category: | + | [[Category: Zhao M]] |
| - | + | [[Category: Zhou W]] | |
| - | + | ||
Current revision
Conserved hypothetical protein from Clostridium thermocellum Cth-2968
| |||||||||||
Categories: Acetivibrio thermocellus | Large Structures | Arendall III WB | Chang J | Chang S-H | Chen L | Florence Q | Habel J | Horanyi P | Kataeva I | Lee D | Lin D | Liu Z-J | Ljundahl L | Nguyen J | Richardson DC | Richardson JS | Rose J | Tempel W | Wang B-C | Xu H | Zhang H | Zhao M | Zhou W

