This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y0e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1y0e" [edit=sysop:move=sysop])
Current revision (07:59, 15 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y0e.png|left|200px]]
 
-
{{STRUCTURE_1y0e| PDB=1y0e | SCENE= }}
+
==Crystal structure of putative ManNAc-6-P epimerase from Staphylococcus aureus (strain N315)==
-
 
+
<StructureSection load='1y0e' size='340' side='right'caption='[[1y0e]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
===Crystal structure of putative ManNAc-6-P epimerase from Staphylococcus aureus (strain N315)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1y0e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y0E FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[1y0e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0E OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0e OCA], [https://pdbe.org/1y0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y0e RCSB], [https://www.ebi.ac.uk/pdbsum/1y0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0e ProSAT], [https://www.topsan.org/Proteins/MCSG/1y0e TOPSAN]</span></td></tr>
-
[[Category: N-acylglucosamine-6-phosphate 2-epimerase]]
+
</table>
-
[[Category: Staphylococcus aureus subsp. aureus]]
+
== Function ==
-
[[Category: Chang, C.]]
+
[https://www.uniprot.org/uniprot/NANE_STAAN NANE_STAAN] Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P) (Potential).
-
[[Category: Joachimiak, A.]]
+
== Evolutionary Conservation ==
-
[[Category: Li, H.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
Check<jmol>
-
[[Category: Isomerase]]
+
<jmolCheckbox>
-
[[Category: Mannac-6-p epimerase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y0/1y0e_consurf.spt"</scriptWhenChecked>
-
[[Category: Mcsg]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Midwest center for structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Nane]]
+
</jmolCheckbox>
-
[[Category: Protein structure initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y0e ConSurf].
-
[[Category: Psi]]
+
<div style="clear:both"></div>
-
[[Category: Structural genomic]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Staphylococcus aureus subsp. aureus N315]]
 +
[[Category: Chang C]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Li H]]

Current revision

Crystal structure of putative ManNAc-6-P epimerase from Staphylococcus aureus (strain N315)

PDB ID 1y0e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools