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1y89

From Proteopedia

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[[Image:1y89.gif|left|200px]]
 
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{{Structure
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==Crystal Structure of devB protein==
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|PDB= 1y89 |SIZE=350|CAPTION= <scene name='initialview01'>1y89</scene>, resolution 2.00&Aring;
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<StructureSection load='1y89' size='340' side='right'caption='[[1y89]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=PE5:3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL'>PE5</scene> and <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>
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<table><tr><td colspan='2'>[[1y89]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y89 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y89 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PE5:3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL'>PE5</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y89 OCA], [https://pdbe.org/1y89 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y89 RCSB], [https://www.ebi.ac.uk/pdbsum/1y89 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y89 ProSAT], [https://www.topsan.org/Proteins/MCSG/1y89 TOPSAN]</span></td></tr>
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</table>
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'''Crystal Structure of devB protein'''
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== Function ==
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[https://www.uniprot.org/uniprot/Q9KL51_VIBCH Q9KL51_VIBCH] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.[ARBA:ARBA00002681][RuleBase:RU365095]
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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1Y89 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y89 OCA].
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Check<jmol>
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[[Category: Single protein]]
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<jmolCheckbox>
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[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y89_consurf.spt"</scriptWhenChecked>
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[[Category: Chruszcz, M.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Cymborowski, M.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Joachimiak, A.]]
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</jmolCheckbox>
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[[Category: Lazarski, K.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y89 ConSurf].
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[[Category: Lezondra, L.]]
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<div style="clear:both"></div>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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__TOC__
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[[Category: Minor, W.]]
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</StructureSection>
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[[Category: Zhang, R.]]
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[[Category: Large Structures]]
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[[Category: Zheng, H.]]
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[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
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[[Category: 2PE]]
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[[Category: Chruszcz M]]
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[[Category: PE5]]
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[[Category: Cymborowski M]]
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[[Category: PEG]]
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[[Category: Joachimiak A]]
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[[Category: PO4]]
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[[Category: Lazarski K]]
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[[Category: mcsg]]
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[[Category: Lezondra L]]
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[[Category: midwest center for structural genomic]]
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[[Category: Minor W]]
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[[Category: protein structure initiative]]
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[[Category: Zhang R]]
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[[Category: psi]]
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[[Category: Zheng H]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:19:36 2008''
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Current revision

Crystal Structure of devB protein

PDB ID 1y89

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