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1ybx
From Proteopedia
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==Conserved hypothetical protein Cth-383 from Clostridium thermocellum== | ==Conserved hypothetical protein Cth-383 from Clostridium thermocellum== | ||
| - | <StructureSection load='1ybx' size='340' side='right' caption='[[1ybx]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='1ybx' size='340' side='right'caption='[[1ybx]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1ybx]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1ybx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBX FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybx OCA], [https://pdbe.org/1ybx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybx RCSB], [https://www.ebi.ac.uk/pdbsum/1ybx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybx ProSAT], [https://www.topsan.org/Proteins/SECSG/1ybx TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Y2143_ACET2 Y2143_ACET2] Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.[HAMAP-Rule:MF_00274] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybx ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Acetivibrio thermocellus]] |
| - | [[Category: Chang | + | [[Category: Large Structures]] |
| - | [[Category: Chang | + | [[Category: Chang J]] |
| - | [[Category: Chen | + | [[Category: Chang S-H]] |
| - | [[Category: Florence | + | [[Category: Chen L]] |
| - | [[Category: Habel | + | [[Category: Florence Q]] |
| - | [[Category: Horanyi | + | [[Category: Habel J]] |
| - | [[Category: Kataeva | + | [[Category: Horanyi P]] |
| - | [[Category: Lee | + | [[Category: Kataeva I]] |
| - | [[Category: Lin | + | [[Category: Lee D]] |
| - | [[Category: Liu | + | [[Category: Lin D]] |
| - | [[Category: Ljundahl | + | [[Category: Liu Z-J]] |
| - | [[Category: Nguyen | + | [[Category: Ljundahl L]] |
| - | [[Category: Rose | + | [[Category: Nguyen J]] |
| - | + | [[Category: Rose J]] | |
| - | [[Category: Tempel | + | [[Category: Tempel W]] |
| - | [[Category: Wang | + | [[Category: Wang B-C]] |
| - | [[Category: Xu | + | [[Category: Xu H]] |
| - | [[Category: Zhang | + | [[Category: Zhang H]] |
| - | [[Category: Zhao | + | [[Category: Zhao M]] |
| - | [[Category: Zhou | + | [[Category: Zhou W]] |
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Current revision
Conserved hypothetical protein Cth-383 from Clostridium thermocellum
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Categories: Acetivibrio thermocellus | Large Structures | Chang J | Chang S-H | Chen L | Florence Q | Habel J | Horanyi P | Kataeva I | Lee D | Lin D | Liu Z-J | Ljundahl L | Nguyen J | Rose J | Tempel W | Wang B-C | Xu H | Zhang H | Zhao M | Zhou W
