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1yby
From Proteopedia
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| - | [[Image:1yby.gif|left|200px]]<br /><applet load="1yby" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1yby, resolution 1.950Å" /> | ||
| - | '''Conserved hypothetical protein Cth-95 from Clostridium thermocellum'''<br /> | ||
| - | == | + | ==Conserved hypothetical protein Cth-95 from Clostridium thermocellum== |
| - | + | <StructureSection load='1yby' size='340' side='right'caption='[[1yby]], [[Resolution|resolution]] 1.95Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [[ | + | <table><tr><td colspan='2'>[[1yby]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBY FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> | |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yby OCA], [https://pdbe.org/1yby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yby RCSB], [https://www.ebi.ac.uk/pdbsum/1yby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yby ProSAT], [https://www.topsan.org/Proteins/SECSG/1yby TOPSAN]</span></td></tr> | |
| - | [[ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/EFP_ACET2 EFP_ACET2] Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.[HAMAP-Rule:MF_00141] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | [ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1yby_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | + | </jmolCheckbox> | |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yby ConSurf]. |
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| - | + | ==See Also== | |
| + | *[[Elongation factor 3D structures|Elongation factor 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Acetivibrio thermocellus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Chang J]] | ||
| + | [[Category: Chang S-H]] | ||
| + | [[Category: Chen L]] | ||
| + | [[Category: Florence Q]] | ||
| + | [[Category: Habel J]] | ||
| + | [[Category: Horanyi P]] | ||
| + | [[Category: Kataeva I]] | ||
| + | [[Category: Lee D]] | ||
| + | [[Category: Lin D]] | ||
| + | [[Category: Liu Z-J]] | ||
| + | [[Category: Ljundahl L]] | ||
| + | [[Category: Nguyen J]] | ||
| + | [[Category: Rose J]] | ||
| + | [[Category: Tempel W]] | ||
| + | [[Category: Wang B-C]] | ||
| + | [[Category: Xu H]] | ||
| + | [[Category: Zhang H]] | ||
| + | [[Category: Zhao M]] | ||
| + | [[Category: Zhou W]] | ||
Current revision
Conserved hypothetical protein Cth-95 from Clostridium thermocellum
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Categories: Acetivibrio thermocellus | Large Structures | Chang J | Chang S-H | Chen L | Florence Q | Habel J | Horanyi P | Kataeva I | Lee D | Lin D | Liu Z-J | Ljundahl L | Nguyen J | Rose J | Tempel W | Wang B-C | Xu H | Zhang H | Zhao M | Zhou W
