This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yle

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 15 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yle.png|left|200px]]
 
-
{{STRUCTURE_1yle| PDB=1yle | SCENE= }}
+
==The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas aeruginosa.==
-
 
+
<StructureSection load='1yle' size='340' side='right'caption='[[1yle]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas aeruginosa.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1yle]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YLE FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[1yle]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLE OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yle OCA], [https://pdbe.org/1yle PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yle RCSB], [https://www.ebi.ac.uk/pdbsum/1yle PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yle ProSAT], [https://www.topsan.org/Proteins/MCSG/1yle TOPSAN]</span></td></tr>
-
[[Category: Arginine N-succinyltransferase]]
+
</table>
-
[[Category: Pseudomonas aeruginosa]]
+
== Function ==
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/ASTA_PSEAE ASTA_PSEAE] Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine. Also acts on L-ornithine.
-
[[Category: Acyltransferase]]
+
== Evolutionary Conservation ==
-
[[Category: Arginine metabolism]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Arginine n-succinyltransferase]]
+
Check<jmol>
-
[[Category: Mcsg]]
+
<jmolCheckbox>
-
[[Category: Midwest center for structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yl/1yle_consurf.spt"</scriptWhenChecked>
-
[[Category: Protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yle ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Psi]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Transferase]]
 

Current revision

The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas aeruginosa.

PDB ID 1yle

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools