1yue

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(New page: 200px<br /><applet load="1yue" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yue, resolution 2.9&Aring;" /> '''Bacteriophage T4 caps...)
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[[Image:1yue.gif|left|200px]]<br /><applet load="1yue" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1yue, resolution 2.9&Aring;" />
 
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'''Bacteriophage T4 capsid vertex protein gp24'''<br />
 
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==Overview==
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==Bacteriophage T4 capsid vertex protein gp24==
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Gene product (gp) 24 of bacteriophage T4 forms the pentameric vertices of, the capsid. Using x-ray crystallography, we found the principal domain of, gp24 to have a polypeptide fold similar to that of the HK97 phage capsid, protein plus an additional insertion domain. Fitting gp24 monomers into a, cryo-EM density map of the mature T4 capsid suggests that the insertion, domain interacts with a neighboring subunit, effecting a stabilization, analogous to the covalent crosslinking in the HK97 capsid. Sequence, alignment and genetic data show that the folds of gp24 and the, hexamer-forming capsid protein, gp23*, are similar. Accordingly, models of, gp24* pentamers, gp23* hexamers, and the whole capsid were built, based on, a cryo-EM image reconstruction of the capsid. Mutations in gene 23 that, affect capsid shape map to the capsomer's periphery, whereas mutations, that allow gp23 to substitute for gp24 at the vertices modify the, interactions between monomers within capsomers. Structural data show that, capsid proteins of most tailed phages, and some eukaryotic viruses, may, have evolved from a common ancestor.
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<StructureSection load='1yue' size='340' side='right'caption='[[1yue]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1yue]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YUE FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yue OCA], [https://pdbe.org/1yue PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yue RCSB], [https://www.ebi.ac.uk/pdbsum/1yue PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yue ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSP_BPT4 CAPSP_BPT4] Capsid protein that self-associates to form 11 pentons, building the T=13 laevo capsid in association with 160 hexamers of gp23* and one dodecamer of gp20.<ref>PMID:11162794</ref> <ref>PMID:15071181</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yu/1yue_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yue ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Gene product (gp) 24 of bacteriophage T4 forms the pentameric vertices of the capsid. Using x-ray crystallography, we found the principal domain of gp24 to have a polypeptide fold similar to that of the HK97 phage capsid protein plus an additional insertion domain. Fitting gp24 monomers into a cryo-EM density map of the mature T4 capsid suggests that the insertion domain interacts with a neighboring subunit, effecting a stabilization analogous to the covalent crosslinking in the HK97 capsid. Sequence alignment and genetic data show that the folds of gp24 and the hexamer-forming capsid protein, gp23*, are similar. Accordingly, models of gp24* pentamers, gp23* hexamers, and the whole capsid were built, based on a cryo-EM image reconstruction of the capsid. Mutations in gene 23 that affect capsid shape map to the capsomer's periphery, whereas mutations that allow gp23 to substitute for gp24 at the vertices modify the interactions between monomers within capsomers. Structural data show that capsid proteins of most tailed phages, and some eukaryotic viruses, may have evolved from a common ancestor.
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==About this Structure==
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Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.,Fokine A, Leiman PG, Shneider MM, Ahvazi B, Boeshans KM, Steven AC, Black LW, Mesyanzhinov VV, Rossmann MG Proc Natl Acad Sci U S A. 2005 May 17;102(20):7163-8. Epub 2005 May 6. PMID:15878991<ref>PMID:15878991</ref>
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1YUE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteriophage_t4 Bacteriophage t4]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YUE OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry., Fokine A, Leiman PG, Shneider MM, Ahvazi B, Boeshans KM, Steven AC, Black LW, Mesyanzhinov VV, Rossmann MG, Proc Natl Acad Sci U S A. 2005 May 17;102(20):7163-8. Epub 2005 May 6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15878991 15878991]
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</div>
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[[Category: Bacteriophage t4]]
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<div class="pdbe-citations 1yue" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Ahvazi, B.]]
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<references/>
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[[Category: Black, L.W.]]
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__TOC__
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[[Category: Boeshans, K.M.]]
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</StructureSection>
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[[Category: Fokine, A.]]
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[[Category: Escherichia virus T4]]
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[[Category: Leiman, P.G.]]
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[[Category: Large Structures]]
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[[Category: Mesyanzhinov, V.V.]]
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[[Category: Ahvazi B]]
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[[Category: Rossmann, M.G.]]
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[[Category: Black LW]]
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[[Category: Shneider, M.M.]]
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[[Category: Boeshans KM]]
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[[Category: Steven, A.C.]]
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[[Category: Fokine A]]
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[[Category: bacteriophage]]
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[[Category: Leiman PG]]
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[[Category: bacteriophage t4]]
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[[Category: Mesyanzhinov VV]]
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[[Category: capsid protein]]
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[[Category: Rossmann MG]]
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[[Category: gp24]]
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[[Category: Shneider MM]]
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[[Category: hk97]]
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[[Category: Steven AC]]
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[[Category: mad]]
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[[Category: vertex]]
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[[Category: virus]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:03:28 2007''
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Current revision

Bacteriophage T4 capsid vertex protein gp24

PDB ID 1yue

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