This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1yxe
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Structure and inter-domain interactions of domain II from the blood stage malarial protein, apical membrane antigen 1== | ==Structure and inter-domain interactions of domain II from the blood stage malarial protein, apical membrane antigen 1== | ||
| - | <StructureSection load='1yxe' size='340' side='right' caption='[[1yxe | + | <StructureSection load='1yxe' size='340' side='right'caption='[[1yxe]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1yxe]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1yxe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YXE FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <table> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxe OCA], [https://pdbe.org/1yxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxe RCSB], [https://www.ebi.ac.uk/pdbsum/1yxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxe ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/AMA1_PLAFF AMA1_PLAFF] Involved in parasite invasion of erythrocytes. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yxe_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yxe_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yxe ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 23: | Line 27: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1yxe" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Plasmodium falciparum | + | [[Category: Large Structures]] |
| - | [[Category: Anders | + | [[Category: Plasmodium falciparum 3D7]] |
| - | [[Category: Babon | + | [[Category: Anders RF]] |
| - | [[Category: Feng | + | [[Category: Babon JJ]] |
| - | [[Category: Keizer | + | [[Category: Feng ZP]] |
| - | [[Category: Murphy | + | [[Category: Keizer DW]] |
| - | [[Category: Norton | + | [[Category: Murphy VJ]] |
| - | [[Category: Stevenson | + | [[Category: Norton RS]] |
| - | [[Category: Yao | + | [[Category: Stevenson RA]] |
| - | + | [[Category: Yao S]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure and inter-domain interactions of domain II from the blood stage malarial protein, apical membrane antigen 1
| |||||||||||

