This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zd0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 15 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1zd0.png|left|200px]]
 
-
{{STRUCTURE_1zd0| PDB=1zd0 | SCENE= }}
+
==Crystal structure of Pfu-542154 conserved hypothetical protein==
-
 
+
<StructureSection load='1zd0' size='340' side='right'caption='[[1zd0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Crystal structure of Pfu-542154 conserved hypothetical protein===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1zd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZD0 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
[[1zd0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZD0 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zd0 OCA], [https://pdbe.org/1zd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1zd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zd0 ProSAT], [https://www.topsan.org/Proteins/SECSG/1zd0 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8U3E5_PYRFU Q8U3E5_PYRFU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/1zd0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zd0 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Adams, M W.W.]]
+
[[Category: Adams MWW]]
-
[[Category: Bereton, P.]]
+
[[Category: Bereton P]]
-
[[Category: Chang, S H.]]
+
[[Category: Chang SH]]
-
[[Category: Chen, L.]]
+
[[Category: Chen L]]
-
[[Category: Florence, Q J.T.]]
+
[[Category: Florence QJT]]
-
[[Category: Habel, J E.]]
+
[[Category: Habel JE]]
-
[[Category: Horanyi, P S.]]
+
[[Category: Horanyi PS]]
-
[[Category: II, F L.Poole.]]
+
[[Category: Izumi M]]
-
[[Category: Izumi, M.]]
+
[[Category: Jenny Jr FE]]
-
[[Category: Jenny, F E.]]
+
[[Category: Lee D]]
-
[[Category: Lee, D.]]
+
[[Category: Liu ZJ]]
-
[[Category: Liu, Z J.]]
+
[[Category: Nguyen J]]
-
[[Category: Nguyen, J.]]
+
[[Category: Poole II FL]]
-
[[Category: Rose, J P.]]
+
[[Category: Rose JP]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Shah C]]
-
[[Category: Shah, C.]]
+
[[Category: Sugar FJ]]
-
[[Category: Sugar, F J.]]
+
[[Category: Tempel W]]
-
[[Category: Tempel, W.]]
+
[[Category: Wang BC]]
-
[[Category: Wang, B C.]]
+
[[Category: Zhou W]]
-
[[Category: Zhou, W.]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Secsg]]
+
-
[[Category: Southeast collaboratory for structural genomic]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of Pfu-542154 conserved hypothetical protein

PDB ID 1zd0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools