This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zkd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:11, 15 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1zkd.png|left|200px]]
 
-
{{STRUCTURE_1zkd| PDB=1zkd | SCENE= }}
+
==X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58==
-
 
+
<StructureSection load='1zkd' size='340' side='right'caption='[[1zkd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
===X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1zkd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZKD FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[1zkd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKD OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zkd OCA], [https://pdbe.org/1zkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zkd RCSB], [https://www.ebi.ac.uk/pdbsum/1zkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zkd ProSAT], [https://www.topsan.org/Proteins/NESGC/1zkd TOPSAN]</span></td></tr>
-
[[Category: Rhodopseudomonas palustris]]
+
</table>
-
[[Category: Acton, T.]]
+
== Function ==
-
[[Category: Hunt, J F.]]
+
[https://www.uniprot.org/uniprot/Q6N1P6_RHOPA Q6N1P6_RHOPA]
-
[[Category: Kuzin, A P.]]
+
== Evolutionary Conservation ==
-
[[Category: Ma, L.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Montelione, G.]]
+
Check<jmol>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<jmolCheckbox>
-
[[Category: Tong, L.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zk/1zkd_consurf.spt"</scriptWhenChecked>
-
[[Category: Vorobiev, S M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Xiao, R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Yong, W.]]
+
</jmolCheckbox>
-
[[Category: Nesg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zkd ConSurf].
-
[[Category: Northeast structural genomics consortium]]
+
<div style="clear:both"></div>
-
[[Category: Protein structure initiative]]
+
__TOC__
-
[[Category: Psi]]
+
</StructureSection>
-
[[Category: Rpr58]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Rhodopseudomonas palustris CGA009]]
-
[[Category: Unknown function]]
+
[[Category: Acton T]]
 +
[[Category: Hunt JF]]
 +
[[Category: Kuzin AP]]
 +
[[Category: Ma L]]
 +
[[Category: Montelione G]]
 +
[[Category: Tong L]]
 +
[[Category: Vorobiev SM]]
 +
[[Category: Xiao R]]
 +
[[Category: Yong W]]

Current revision

X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58

PDB ID 1zkd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools