This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mv5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:51, 22 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of LmrA ATP-binding domain==
==Crystal structure of LmrA ATP-binding domain==
-
<StructureSection load='1mv5' size='340' side='right' caption='[[1mv5]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
+
<StructureSection load='1mv5' size='340' side='right'caption='[[1mv5]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1mv5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_lactis"_lister_1873 "bacterium lactis" lister 1873]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MV5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1MV5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1mv5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MV5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mv5 OCA], [http://pdbe.org/1mv5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1mv5 RCSB], [http://www.ebi.ac.uk/pdbsum/1mv5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1mv5 ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mv5 OCA], [https://pdbe.org/1mv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mv5 RCSB], [https://www.ebi.ac.uk/pdbsum/1mv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mv5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LMRA_LACLA LMRA_LACLA]] Efflux transporter for a variety of amphiphilic cationic compounds, including antibiotics (By similarity).
+
[https://www.uniprot.org/uniprot/LMRA_LACLA LMRA_LACLA] Efflux transporter for a variety of amphiphilic cationic compounds, including antibiotics (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mv5 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mv5 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium lactis lister 1873]]
+
[[Category: Lactococcus lactis]]
-
[[Category: Chen, H]]
+
[[Category: Large Structures]]
-
[[Category: Patel, D]]
+
[[Category: Chen H]]
-
[[Category: Yuan, Y]]
+
[[Category: Patel D]]
-
[[Category: Abc transporter]]
+
[[Category: Yuan Y]]
-
[[Category: Asymmetric dimer]]
+
-
[[Category: P-glycoprotein]]
+
-
[[Category: Tetramer]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Two-site alternating mechanism]]
+

Current revision

Crystal structure of LmrA ATP-binding domain

PDB ID 1mv5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools