1soy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 22 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1soy.jpg|left|200px]]
 
-
{{Structure
+
==Solution structure of the bacterial frataxin orthologue, CyaY==
-
|PDB= 1soy |SIZE=350|CAPTION= <scene name='initialview01'>1soy</scene>
+
<StructureSection load='1soy' size='340' side='right'caption='[[1soy]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1soy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SOY FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= CYAY, B3807 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1soy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1soy OCA], [https://pdbe.org/1soy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1soy RCSB], [https://www.ebi.ac.uk/pdbsum/1soy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1soy ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1soy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1soy OCA], [http://www.ebi.ac.uk/pdbsum/1soy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1soy RCSB]</span>
+
[https://www.uniprot.org/uniprot/CYAY_ECOLI CYAY_ECOLI]
-
}}
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/so/1soy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1soy ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
CyaY is the bacterial ortholog of frataxin, a small mitochondrial iron binding protein thought to be involved in iron sulphur cluster formation. Loss of frataxin function leads to the neurodegenerative disorder Friedreich's ataxia. We have solved the solution structure of CyaY and used the structural information to map iron binding onto the protein surface. Comparison of the behavior of wild-type CyaY with that of a mutant indicates that specific binding with a defined stoichiometry does not require aggregation and that the main binding site, which hosts both Fe(2+) and Fe(3+), occupies a highly anionic surface of the molecule. This function is conserved across species since the corresponding region of human frataxin is also able to bind iron, albeit with weaker affinity. The presence of secondary binding sites on CyaY, but not on frataxin, hints at a possible polymerization mechanism. We suggest mutations that may provide further insights into the frataxin function.
-
'''Solution structure of the bacterial frataxin orthologue, CyaY'''
+
Solution structure of the bacterial frataxin ortholog, CyaY: mapping the iron binding sites.,Nair M, Adinolfi S, Pastore C, Kelly G, Temussi P, Pastore A Structure. 2004 Nov;12(11):2037-48. PMID:15530368<ref>PMID:15530368</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1soy" style="background-color:#fffaf0;"></div>
-
==Overview==
+
==See Also==
-
CyaY is the bacterial ortholog of frataxin, a small mitochondrial iron binding protein thought to be involved in iron sulphur cluster formation. Loss of frataxin function leads to the neurodegenerative disorder Friedreich's ataxia. We have solved the solution structure of CyaY and used the structural information to map iron binding onto the protein surface. Comparison of the behavior of wild-type CyaY with that of a mutant indicates that specific binding with a defined stoichiometry does not require aggregation and that the main binding site, which hosts both Fe(2+) and Fe(3+), occupies a highly anionic surface of the molecule. This function is conserved across species since the corresponding region of human frataxin is also able to bind iron, albeit with weaker affinity. The presence of secondary binding sites on CyaY, but not on frataxin, hints at a possible polymerization mechanism. We suggest mutations that may provide further insights into the frataxin function.
+
*[[Frataxin 3D Structures|Frataxin 3D Structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
1SOY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SOY OCA].
+
__TOC__
-
 
+
</StructureSection>
-
==Reference==
+
-
Solution structure of the bacterial frataxin ortholog, CyaY: mapping the iron binding sites., Nair M, Adinolfi S, Pastore C, Kelly G, Temussi P, Pastore A, Structure. 2004 Nov;12(11):2037-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15530368 15530368]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Adinolfi, S.]]
+
[[Category: Adinolfi S]]
-
[[Category: Kelly, G.]]
+
[[Category: Kelly G]]
-
[[Category: Nair, M.]]
+
[[Category: Nair M]]
-
[[Category: Pastore, A.]]
+
[[Category: Pastore A]]
-
[[Category: Pastore, C.]]
+
[[Category: Pastore C]]
-
[[Category: Temussi, P.]]
+
[[Category: Temussi P]]
-
[[Category: frataxin]]
+
-
[[Category: friedreich's ataxia iron binding]]
+
-
[[Category: nmr]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:45:02 2008''
+

Current revision

Solution structure of the bacterial frataxin orthologue, CyaY

PDB ID 1soy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1soy"
Personal tools