This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vky

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 22 May 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1vky' size='340' side='right'caption='[[1vky]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='1vky' size='340' side='right'caption='[[1vky]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1vky]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1VKY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1vky]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VKY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">QUEA, TM0574 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1vky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vky OCA], [http://pdbe.org/1vky PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vky RCSB], [http://www.ebi.ac.uk/pdbsum/1vky PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vky ProSAT], [http://www.topsan.org/Proteins/JCSG/1vky TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vky OCA], [https://pdbe.org/1vky PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vky RCSB], [https://www.ebi.ac.uk/pdbsum/1vky PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vky ProSAT], [https://www.topsan.org/Proteins/JCSG/1vky TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/QUEA_THEMA QUEA_THEMA]] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).[HAMAP-Rule:MF_00113]
+
[https://www.uniprot.org/uniprot/QUEA_THEMA QUEA_THEMA] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).[HAMAP-Rule:MF_00113]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43589]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Thermotoga maritima]]
-
[[Category: Isomerase]]
+
-
[[Category: Jcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: S-adenosylmethionine trna ribosyltransferase]]
+
-
[[Category: Tm0574]]
+

Current revision

Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution

PDB ID 1vky

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools