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2kdc

From Proteopedia

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{{Seed}}
 
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[[Image:2kdc.jpg|left|200px]]
 
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<!--
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==NMR Solution Structure of E. coli diacylglycerol kinase (DAGK) in DPC micelles==
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The line below this paragraph, containing "STRUCTURE_2kdc", creates the "Structure Box" on the page.
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<StructureSection load='2kdc' size='340' side='right'caption='[[2kdc]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2kdc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KDC FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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-->
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kdc OCA], [https://pdbe.org/2kdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kdc RCSB], [https://www.ebi.ac.uk/pdbsum/2kdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kdc ProSAT]</span></td></tr>
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{{STRUCTURE_2kdc| PDB=2kdc | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KDGL_ECOLI KDGL_ECOLI] Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/2kdc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kdc ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Escherichia coli diacylglycerol kinase (DAGK) represents a family of integral membrane enzymes that is unrelated to all other phosphotransferases. We have determined the three-dimensional structure of the DAGK homotrimer with the use of solution nuclear magnetic resonance. The third transmembrane helix from each subunit is domain-swapped with the first and second transmembrane segments from an adjacent subunit. Each of DAGK's three active sites resembles a portico. The cornice of the portico appears to be the determinant of DAGK's lipid substrate specificity and overhangs the site of phosphoryl transfer near the water-membrane interface. Mutations to cysteine that caused severe misfolding were located in or near the active site, indicating a high degree of overlap between sites responsible for folding and for catalysis.
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===NMR Solution Structure of E. coli diacylglycerol kinase (DAGK) in DPC micelles===
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Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase.,Van Horn WD, Kim HJ, Ellis CD, Hadziselimovic A, Sulistijo ES, Karra MD, Tian C, Sonnichsen FD, Sanders CR Science. 2009 Jun 26;324(5935):1726-9. PMID:19556511<ref>PMID:19556511</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2kdc" style="background-color:#fffaf0;"></div>
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<!--
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19556511}}, adds the Publication Abstract to the page
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*[[Diacylglycerol kinase 3D structures|Diacylglycerol kinase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19556511 is the PubMed ID number.
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== References ==
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-->
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<references/>
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{{ABSTRACT_PUBMED_19556511}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Escherichia coli K-12]]
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2KDC is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDC OCA].
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[[Category: Large Structures]]
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[[Category: Ellis CD]]
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==Reference==
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[[Category: Hadziselimovic A]]
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<ref group="xtra">PMID:19556511</ref><references group="xtra"/>
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[[Category: Karra MD]]
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[[Category: Diacylglycerol kinase]]
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[[Category: Kim H]]
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[[Category: Escherichia coli]]
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[[Category: Sanders CR]]
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[[Category: Ellis, C D.]]
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[[Category: Sonnichsen FD]]
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[[Category: Hadziselimovic, A.]]
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[[Category: Sulistijo ES]]
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[[Category: Horn, W D.Van.]]
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[[Category: Tian C]]
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[[Category: Karra, M D.]]
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[[Category: Van Horn WD]]
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[[Category: Kim, H.]]
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[[Category: Sanders, C R.]]
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[[Category: Sonnichsen, F D.]]
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[[Category: Sulistijo, E S.]]
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[[Category: Tian, C.]]
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[[Category: Cell inner membrane]]
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[[Category: Cell membrane]]
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[[Category: Dagk]]
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[[Category: Kinase]]
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[[Category: Membrane]]
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[[Category: Membrane protein]]
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[[Category: Phospholipid biosynthesis]]
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[[Category: Solution nmr]]
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[[Category: Transferase]]
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[[Category: Transmembrane]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 8 09:30:02 2009''
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Current revision

NMR Solution Structure of E. coli diacylglycerol kinase (DAGK) in DPC micelles

PDB ID 2kdc

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