This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2khq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:39, 22 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2khq.png|left|200px]]
 
-
{{STRUCTURE_2khq| PDB=2khq | SCENE= }}
+
==Solution NMR structure of a phage integrase SSP1947 fragment 59-159 from Staphylococcus saprophyticus, Northeast Structural Genomics Consortium Target SyR103B==
-
 
+
<StructureSection load='2khq' size='340' side='right'caption='[[2khq]]' scene=''>
-
===Solution NMR structure of a phage integrase SSP1947 fragment 59-159 from Staphylococcus saprophyticus, Northeast Structural Genomics Consortium Target SyR103B===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2khq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305_=_NCTC_7292 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHQ FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khq OCA], [https://pdbe.org/2khq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khq RCSB], [https://www.ebi.ac.uk/pdbsum/2khq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khq ProSAT], [https://www.topsan.org/Proteins/NESGC/2khq TOPSAN]</span></td></tr>
-
[[2khq]] is a 1 chain structure of [[Phage integrase]] with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_saprophyticus_subsp._saprophyticus_atcc_15305 Staphylococcus saprophyticus subsp. saprophyticus atcc 15305]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHQ OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q49VW8_STAS1 Q49VW8_STAS1]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/2khq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2khq ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phage integrase|Phage integrase]]
+
*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
-
[[Category: Staphylococcus saprophyticus subsp. saprophyticus atcc 15305]]
+
__TOC__
-
[[Category: Acton, T B.]]
+
</StructureSection>
-
[[Category: Belote, R L.]]
+
[[Category: Large Structures]]
-
[[Category: Ciccosanti, C.]]
+
[[Category: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]]
-
[[Category: Eletsky, A.]]
+
[[Category: Acton TB]]
-
[[Category: Everett, J K.]]
+
[[Category: Belote RL]]
-
[[Category: Hua, J.]]
+
[[Category: Ciccosanti C]]
-
[[Category: Jiang, M.]]
+
[[Category: Eletsky A]]
-
[[Category: Mills, J L.]]
+
[[Category: Everett JK]]
-
[[Category: Montelione, G T.]]
+
[[Category: Hua J]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Jiang M]]
-
[[Category: Nair, R.]]
+
[[Category: Mills JL]]
-
[[Category: Rost, B.]]
+
[[Category: Montelione GT]]
-
[[Category: Swapna, G V.T.]]
+
[[Category: Nair R]]
-
[[Category: Szyperski, T.]]
+
[[Category: Rost B]]
-
[[Category: Xiao, R.]]
+
[[Category: Swapna GVT]]
-
[[Category: All-alpha]]
+
[[Category: Szyperski T]]
-
[[Category: Dna binding protein]]
+
[[Category: Xiao R]]
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Solution NMR structure of a phage integrase SSP1947 fragment 59-159 from Staphylococcus saprophyticus, Northeast Structural Genomics Consortium Target SyR103B

PDB ID 2khq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2khq"
Personal tools