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4pyt

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==Crystal structure of a MurB family EP-UDP-N-acetylglucosamine reductase==
==Crystal structure of a MurB family EP-UDP-N-acetylglucosamine reductase==
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<StructureSection load='4pyt' size='340' side='right' caption='[[4pyt]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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<StructureSection load='4pyt' size='340' side='right'caption='[[4pyt]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4pyt]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PYT FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4pyt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PYT FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.853&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-N-acetylmuramate_dehydrogenase UDP-N-acetylmuramate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.98 1.3.1.98] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pyt RCSB], [http://www.ebi.ac.uk/pdbsum/4pyt PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pyt OCA], [https://pdbe.org/4pyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pyt RCSB], [https://www.ebi.ac.uk/pdbsum/4pyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pyt ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MURB_BACLD MURB_BACLD] Cell wall formation.[HAMAP-Rule:MF_00037]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report on the discovery, isolation, and use of a novel yellow fluorescent protein. Lucigen Yellow (LucY) binds one FAD molecule within its core, thus shielding it from water and maintaining its structure so that fluorescence is 10-fold higher than freely soluble FAD. LucY displays excitation and emission spectra characteristic of FAD, with 3 excitation peaks at 276 nm, 377 nm, and 460 nm and a single emission peak at 530 nm. These excitation and emission maxima provide the large Stokes shift beneficial to fluorescence experimentation. LucY belongs to the MurB family of UDP-N-acetylenolpyruvylglucosamine reductases. The high resolution crystal structure shows that in contrast to other structurally resolved MurB enzymes, LucY does not contain a potentially quenching aromatic residue near the FAD isoalloxazine ring, which may explain its increased fluorescence over related proteins. Using E. coli as a system in which to develop LucY as a reporter, we show that it is amenable to circular permutation and use as a reporter of protein-protein interaction. Fragmentation between its distinct domains renders LucY non-fluorescent, but fluorescence can be partially restored by fusion of the fragments to interacting protein domains. Thus, LucY may find application in Protein-fragment Complementation Assays for evaluating protein-protein interactions.
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LucY: A Versatile New Fluorescent Reporter Protein.,Auldridge ME, Cao H, Sen S, Franz LP, Bingman CA, Yennamalli RM, Phillips GN Jr, Mead D, Steinmetz EJ PLoS One. 2015 Apr 23;10(4):e0124272. doi: 10.1371/journal.pone.0124272., eCollection 2015. PMID:25906065<ref>PMID:25906065</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4pyt" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: UDP-N-acetylmuramate dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Auldridge, M]]
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[[Category: Unidentified]]
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[[Category: Bingman, C]]
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[[Category: Auldridge M]]
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[[Category: Cao, H]]
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[[Category: Bingman C]]
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[[Category: Franz, L]]
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[[Category: Cao H]]
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[[Category: Mead, D]]
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[[Category: Franz L]]
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[[Category: Phillips, G N]]
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[[Category: Mead D]]
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[[Category: Sen, S]]
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[[Category: Phillips Jr GN]]
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[[Category: Steinmetz, E]]
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[[Category: Sen S]]
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[[Category: Fad binding]]
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[[Category: Steinmetz E]]
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[[Category: Murb/flavoprotein]]
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[[Category: Oxidoreductase]]
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Current revision

Crystal structure of a MurB family EP-UDP-N-acetylglucosamine reductase

PDB ID 4pyt

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