This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2apf
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2apf.png|left|200px]] | ||
| - | + | ==Crystal Structure of the A52V/S54N/K66E variant of the murine T cell receptor V beta 8.2 domain== | |
| + | <StructureSection load='2apf' size='340' side='right'caption='[[2apf]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2apf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APF FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apf OCA], [https://pdbe.org/2apf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apf RCSB], [https://www.ebi.ac.uk/pdbsum/2apf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apf ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A2NAI0_RAT A2NAI0_RAT] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2apf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | === | + | ==See Also== |
| - | + | *[[T-cell receptor 3D structures|T-cell receptor 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | [[ | + | [[Category: Large Structures]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Rattus norvegicus]] | [[Category: Rattus norvegicus]] | ||
| - | [[Category: Cho | + | [[Category: Cho S]] |
| - | [[Category: Guan | + | [[Category: Guan R]] |
| - | [[Category: Kerzic | + | [[Category: Kerzic MC]] |
| - | [[Category: Kieke | + | [[Category: Kieke MC]] |
| - | [[Category: Kranz | + | [[Category: Kranz DM]] |
| - | [[Category: Mariuzza | + | [[Category: Mariuzza RA]] |
| - | [[Category: Sundberg | + | [[Category: Sundberg EJ]] |
| - | [[Category: Swaminathan | + | [[Category: Swaminathan CP]] |
| - | [[Category: Yang | + | [[Category: Yang J]] |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of the A52V/S54N/K66E variant of the murine T cell receptor V beta 8.2 domain
| |||||||||||
Categories: Large Structures | Rattus norvegicus | Cho S | Guan R | Kerzic MC | Kieke MC | Kranz DM | Mariuzza RA | Sundberg EJ | Swaminathan CP | Yang J

