This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2apf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:16, 22 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2apf.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the A52V/S54N/K66E variant of the murine T cell receptor V beta 8.2 domain==
-
The line below this paragraph, containing "STRUCTURE_2apf", creates the "Structure Box" on the page.
+
<StructureSection load='2apf' size='340' side='right'caption='[[2apf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2apf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
-
{{STRUCTURE_2apf| PDB=2apf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apf OCA], [https://pdbe.org/2apf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apf RCSB], [https://www.ebi.ac.uk/pdbsum/2apf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A2NAI0_RAT A2NAI0_RAT]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2apf ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the A52V/S54N/K66E variant of the murine T cell receptor V beta 8.2 domain===
+
==See Also==
-
 
+
*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APF OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Rattus norvegicus]]
-
==Reference==
+
[[Category: Cho S]]
-
The nitty-gritty of protein interactions., Schreiber G, Structure. 2005 Dec;13(12):1737-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16338399 16338399]
+
[[Category: Guan R]]
-
[[Category: Cho, S.]]
+
[[Category: Kerzic MC]]
-
[[Category: Guan, R.]]
+
[[Category: Kieke MC]]
-
[[Category: Kerzic, M C.]]
+
[[Category: Kranz DM]]
-
[[Category: Kieke, M C.]]
+
[[Category: Mariuzza RA]]
-
[[Category: Kranz, D M.]]
+
[[Category: Sundberg EJ]]
-
[[Category: Mariuzza, R A.]]
+
[[Category: Swaminathan CP]]
-
[[Category: Sundberg, E J.]]
+
[[Category: Yang J]]
-
[[Category: Swaminathan, C P.]]
+
-
[[Category: Yang, J.]]
+
-
[[Category: T cell receptor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:18:23 2008''
+

Current revision

Crystal Structure of the A52V/S54N/K66E variant of the murine T cell receptor V beta 8.2 domain

PDB ID 2apf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2apf"
Personal tools