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2apo

From Proteopedia

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Current revision (11:17, 22 May 2024) (edit) (undo)
 
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<StructureSection load='2apo' size='340' side='right'caption='[[2apo]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='2apo' size='340' side='right'caption='[[2apo]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2apo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2apo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">truB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067]), NOP10 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apo OCA], [https://pdbe.org/2apo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apo RCSB], [https://www.ebi.ac.uk/pdbsum/2apo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apo ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apo OCA], [https://pdbe.org/2apo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apo RCSB], [https://www.ebi.ac.uk/pdbsum/2apo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/TRUB_METJA TRUB_METJA]] Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (By similarity). [[https://www.uniprot.org/uniprot/NOP10_METJA NOP10_METJA]] Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA (By similarity).
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[https://www.uniprot.org/uniprot/TRUB_METJA TRUB_METJA] Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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*[[Guide-independent Pseudouridine synthase|Guide-independent Pseudouridine synthase]]
*[[Guide-independent Pseudouridine synthase|Guide-independent Pseudouridine synthase]]
*[[Pseudouridine synthase 3D structures|Pseudouridine synthase 3D structures]]
*[[Pseudouridine synthase 3D structures|Pseudouridine synthase 3D structures]]
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*[[RNA-guided pseudouridine synthase|RNA-guided pseudouridine synthase]]
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*[[Ribosome biogenesis protein 3D structures|Ribosome biogenesis protein 3D structures]]
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*[[Ribosome biogenesis protein|Ribosome biogenesis protein]]
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== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Atcc 43067]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Amare, A R.Ferre-D]]
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[[Category: Methanocaldococcus jannaschii]]
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[[Category: Hamma, T]]
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[[Category: Ferre-D'Amare AR]]
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[[Category: Reichow, S L]]
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[[Category: Hamma T]]
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[[Category: Varani, G]]
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[[Category: Reichow SL]]
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[[Category: Box h/aca]]
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[[Category: Varani G]]
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[[Category: Isomerase-rna binding protein complex]]
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[[Category: Protein-protein complex]]
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[[Category: Pseudouridine synthase]]
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[[Category: Pua domain]]
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[[Category: Rna modification]]
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[[Category: Snornp]]
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[[Category: Zinc ribbon]]
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Current revision

Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex

PDB ID 2apo

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OCA

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