This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cvc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2cvc" [edit=sysop:move=sysop])
Current revision (11:31, 22 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cvc.png|left|200px]]
 
-
{{STRUCTURE_2cvc| PDB=2cvc | SCENE= }}
+
==Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)==
-
 
+
<StructureSection load='2cvc' size='340' side='right'caption='[[2cvc]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2cvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CVC FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
[[2cvc]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVC OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cvc OCA], [https://pdbe.org/2cvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cvc RCSB], [https://www.ebi.ac.uk/pdbsum/2cvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HMWC_DESVH HMWC_DESVH] HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cv/2cvc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cvc ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 +
__TOC__
 +
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
-
[[Category: Akutsu, H.]]
+
[[Category: Large Structures]]
-
[[Category: Higuchi, Y.]]
+
[[Category: Akutsu H]]
-
[[Category: Kitamura, M.]]
+
[[Category: Higuchi Y]]
-
[[Category: Morimoto, Y.]]
+
[[Category: Kitamura M]]
-
[[Category: Ozawa, K.]]
+
[[Category: Morimoto Y]]
-
[[Category: Sato, M.]]
+
[[Category: Ozawa K]]
-
[[Category: Shibata, N.]]
+
[[Category: Sato M]]
-
[[Category: Suto, K.]]
+
[[Category: Shibata N]]
-
[[Category: Takayama, Y.]]
+
[[Category: Suto K]]
-
[[Category: Yasuoka, N.]]
+
[[Category: Takayama Y]]
-
[[Category: Electron transport]]
+
[[Category: Yasuoka N]]

Current revision

Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)

PDB ID 2cvc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools