This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2d7v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:34, 22 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d7v.gif|left|200px]]
 
-
{{Structure
+
==Structure of OsmC-like Protein of Unknown Function VCA0330 from Vibrio cholerae O1 biovar eltor str. N16961==
-
|PDB= 2d7v |SIZE=350|CAPTION= <scene name='initialview01'>2d7v</scene>, resolution 1.97&Aring;
+
<StructureSection load='2d7v' size='340' side='right'caption='[[2d7v]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2d7v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D7V FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
-
|GENE= VCA0330 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=686 Vibrio cholerae O1 biovar eltor])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1764 osmC]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7v OCA], [https://pdbe.org/2d7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d7v RCSB], [https://www.ebi.ac.uk/pdbsum/2d7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d7v ProSAT], [https://www.topsan.org/Proteins/MCSG/2d7v TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7v OCA], [http://www.ebi.ac.uk/pdbsum/2d7v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d7v RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9KMK9_VIBCH Q9KMK9_VIBCH]
-
 
+
== Evolutionary Conservation ==
-
'''Structure of OsmC-like Protein of Unknown Function VCA0330 from Vibrio cholerae O1 biovar eltor str. N16961'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/2d7v_consurf.spt"</scriptWhenChecked>
-
2D7V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor Vibrio cholerae o1 biovar eltor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7V OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Vibrio cholerae o1 biovar eltor]]
+
</jmolCheckbox>
-
[[Category: Binkowski, T A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d7v ConSurf].
-
[[Category: Collart, F.]]
+
<div style="clear:both"></div>
-
[[Category: Hatzos, C.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Moy, S.]]
+
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
-
[[Category: hypothetial protein]]
+
[[Category: Binkowski TA]]
-
[[Category: mcsg]]
+
[[Category: Collart F]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Hatzos C]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak A]]
-
[[Category: psi]]
+
[[Category: Moy S]]
-
[[Category: structural genomic]]
+
-
[[Category: vibrio cholerae]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:31:07 2008''
+

Current revision

Structure of OsmC-like Protein of Unknown Function VCA0330 from Vibrio cholerae O1 biovar eltor str. N16961

PDB ID 2d7v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools