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2dgd

From Proteopedia

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[[Image:2dgd.gif|left|200px]]<br /><applet load="2dgd" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2dgd, resolution 2.90&Aring;" />
 
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'''Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii'''<br />
 
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==About this Structure==
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==Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii==
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2DGD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii] with <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Arylmalonate_decarboxylase Arylmalonate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.76 4.1.1.76] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGD OCA].
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<StructureSection load='2dgd' size='340' side='right'caption='[[2dgd]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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[[Category: Arylmalonate decarboxylase]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2dgd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DGD FirstGlance]. <br>
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[[Category: Sulfolobus tokodaii]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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[[Category: Kumagai, I.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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[[Category: Sasaki, T.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dgd OCA], [https://pdbe.org/2dgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dgd RCSB], [https://www.ebi.ac.uk/pdbsum/2dgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dgd ProSAT]</span></td></tr>
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[[Category: Tanabe, E.]]
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</table>
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[[Category: Tanaka, I.]]
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== Function ==
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[[Category: Tanaka, Y.]]
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[https://www.uniprot.org/uniprot/Q974K3_SULTO Q974K3_SULTO]
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[[Category: Tsumoto, K.]]
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== Evolutionary Conservation ==
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[[Category: Yao, M.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: GOL]]
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Check<jmol>
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[[Category: alpha/beta structure]]
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<jmolCheckbox>
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[[Category: octamer]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dgd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:58:33 2008''
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dgd ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Sulfurisphaera tokodaii]]
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[[Category: Kumagai I]]
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[[Category: Sasaki T]]
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[[Category: Tanabe E]]
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[[Category: Tanaka I]]
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[[Category: Tanaka Y]]
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[[Category: Tsumoto K]]
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[[Category: Yao M]]

Current revision

Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii

PDB ID 2dgd

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