This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dgw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 22 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of the second RNA recognition motif in RNA-binding protein 19==
==Solution structure of the second RNA recognition motif in RNA-binding protein 19==
-
<StructureSection load='2dgw' size='340' side='right' caption='[[2dgw]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2dgw' size='340' side='right'caption='[[2dgw]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2dgw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DGW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2dgw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DGW FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RBM19 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dgw OCA], [http://pdbe.org/2dgw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dgw RCSB], [http://www.ebi.ac.uk/pdbsum/2dgw PDBsum], [http://www.topsan.org/Proteins/RSGI/2dgw TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dgw OCA], [https://pdbe.org/2dgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dgw RCSB], [https://www.ebi.ac.uk/pdbsum/2dgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dgw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dgw TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RBM19_HUMAN RBM19_HUMAN]] Plays a role in embryo pre-implantation development (By similarity).
+
[https://www.uniprot.org/uniprot/RBM19_HUMAN RBM19_HUMAN] Plays a role in embryo pre-implantation development (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dgw_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dgw_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Abe, C]]
+
[[Category: Large Structures]]
-
[[Category: Inoue, M]]
+
[[Category: Abe C]]
-
[[Category: Kigawa, T]]
+
[[Category: Inoue M]]
-
[[Category: Muto, Y]]
+
[[Category: Kigawa T]]
-
[[Category: Structural genomic]]
+
[[Category: Muto Y]]
-
[[Category: Shirouzu, M]]
+
[[Category: Shirouzu M]]
-
[[Category: Terada, T]]
+
[[Category: Terada T]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Rna binding protein]]
+
-
[[Category: Rrm domain]]
+
-
[[Category: Rsgi]]
+

Current revision

Solution structure of the second RNA recognition motif in RNA-binding protein 19

PDB ID 2dgw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools