2dig

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==Solusion structure of the Todor domain of human Lamin-B receptor==
==Solusion structure of the Todor domain of human Lamin-B receptor==
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<StructureSection load='2dig' size='340' side='right' caption='[[2dig]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='2dig' size='340' side='right'caption='[[2dig]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2dig]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DIG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DIG FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2dig]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DIG FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LBR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dig OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dig RCSB], [http://www.ebi.ac.uk/pdbsum/2dig PDBsum], [http://www.topsan.org/Proteins/RSGI/2dig TOPSAN]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dig OCA], [https://pdbe.org/2dig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dig RCSB], [https://www.ebi.ac.uk/pdbsum/2dig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dig ProSAT], [https://www.topsan.org/Proteins/RSGI/2dig TOPSAN]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/LBR_HUMAN LBR_HUMAN]] Defects in LBR are a cause of Pelger-Huet anomaly (PHA) [MIM:[http://omim.org/entry/169400 169400]]. PHA is an autosomal dominant inherited abnormality of neutrophils, characterized by reduced nuclear segmentation and an apparently looser chromatin structure. Heterozygotes show hypolobulated neutrophil nuclei with coarse chromatin. Presumed homozygous individuals have ovoid neutrophil nuclei, as well as varying degrees of developmental delay, epilepsy, and skeletal abnormalities.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> <ref>PMID:14617022</ref> Defects in LBR are the cause of hydrops-ectopic calcification-moth-eaten skeletal dysplasia (HEM) [MIM:[http://omim.org/entry/215140 215140]]; also known as Greenberg skeletal dysplasia. HEM is a rare autosomal recessive chondrodystrophy characterized by early in utero lethality and, therefore, considered to be nonviable. Affected fetuses typically present with fetal hydrops, short-limbed dwarfism, and a marked disorganization of chondro-osseous calcification and may present with polydactyly and additional nonskeletal malformations.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> Defects in LBR may be a cause of Reynolds syndrome (REYNS) [MIM:[http://omim.org/entry/613471 613471]]. It is a syndrome specifically associating limited cutaneous systemic sclerosis and primary biliray cirrhosis. It is characterized by liver disease, telangiectasia, abrupt onset of digital paleness or cyanosis in response to cold exposure or stress (Raynaud phenomenon), and variable features of scleroderma. The liver disease is characterized by pruritis, jaundice, hepatomegaly, increased serum alkaline phosphatase and positive serum mitochondrial autoantibodies, all consistent with primary biliary cirrhosis.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> <ref>PMID:20522425</ref>
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[https://www.uniprot.org/uniprot/LBR_HUMAN LBR_HUMAN] Defects in LBR are a cause of Pelger-Huet anomaly (PHA) [MIM:[https://omim.org/entry/169400 169400]. PHA is an autosomal dominant inherited abnormality of neutrophils, characterized by reduced nuclear segmentation and an apparently looser chromatin structure. Heterozygotes show hypolobulated neutrophil nuclei with coarse chromatin. Presumed homozygous individuals have ovoid neutrophil nuclei, as well as varying degrees of developmental delay, epilepsy, and skeletal abnormalities.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> <ref>PMID:14617022</ref> Defects in LBR are the cause of hydrops-ectopic calcification-moth-eaten skeletal dysplasia (HEM) [MIM:[https://omim.org/entry/215140 215140]; also known as Greenberg skeletal dysplasia. HEM is a rare autosomal recessive chondrodystrophy characterized by early in utero lethality and, therefore, considered to be nonviable. Affected fetuses typically present with fetal hydrops, short-limbed dwarfism, and a marked disorganization of chondro-osseous calcification and may present with polydactyly and additional nonskeletal malformations.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> Defects in LBR may be a cause of Reynolds syndrome (REYNS) [MIM:[https://omim.org/entry/613471 613471]. It is a syndrome specifically associating limited cutaneous systemic sclerosis and primary biliray cirrhosis. It is characterized by liver disease, telangiectasia, abrupt onset of digital paleness or cyanosis in response to cold exposure or stress (Raynaud phenomenon), and variable features of scleroderma. The liver disease is characterized by pruritis, jaundice, hepatomegaly, increased serum alkaline phosphatase and positive serum mitochondrial autoantibodies, all consistent with primary biliary cirrhosis.<ref>PMID:12118250</ref> <ref>PMID:12618959</ref> <ref>PMID:20522425</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/LBR_HUMAN LBR_HUMAN]] Anchors the lamina and the heterochromatin to the inner nuclear membrane.<ref>PMID:10828963</ref>
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[https://www.uniprot.org/uniprot/LBR_HUMAN LBR_HUMAN] Anchors the lamina and the heterochromatin to the inner nuclear membrane.<ref>PMID:10828963</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/2dig_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/2dig_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dig ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
== References ==
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</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Inoue, M]]
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[[Category: Large Structures]]
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[[Category: Kigawa, T]]
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[[Category: Inoue M]]
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[[Category: Koshiba, S]]
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[[Category: Kigawa T]]
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[[Category: Structural genomic]]
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[[Category: Koshiba S]]
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[[Category: Tochio, N]]
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[[Category: Tochio N]]
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[[Category: Yokoyama, S]]
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[[Category: Yokoyama S]]
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[[Category: Yoneyama, M]]
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[[Category: Yoneyama M]]
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[[Category: Dna binding protein]]
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[[Category: Integral nuclear envelope inner membrane protein]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Nppsfa]]
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[[Category: Nuclear protein]]
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[[Category: Receptor]]
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[[Category: Rsgi]]
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[[Category: Tudor domain]]
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Current revision

Solusion structure of the Todor domain of human Lamin-B receptor

PDB ID 2dig

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