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1u5i

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(New page: 200px<br /><applet load="1u5i" size="450" color="white" frame="true" align="right" spinBox="true" caption="1u5i, resolution 2.86&Aring;" /> '''Crystal Structure an...)
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[[Image:1u5i.gif|left|200px]]<br /><applet load="1u5i" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1u5i, resolution 2.86&Aring;" />
 
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'''Crystal Structure analysis of rat m-calpain mutant Lys10 Thr'''<br />
 
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==Overview==
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==Crystal Structure analysis of rat m-calpain mutant Lys10 Thr==
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The calpains are a family of cysteine proteases with closely related amino, acid sequences, but a wide range of Ca(2+) requirements (K(d)). For, m-calpain, K(d) is approximately 325microM, for mu-calpain it is, approximately 50microM, and for calpain 3 it is not strictly known but may, be approximately 0.1microM. On the basis of previous structure, determination of m-calpain we postulated that two regions of the calpain, large subunits, the N-terminal peptide (residues 1-20) and a domain III-IV, linker peptide (residues 514-530 in m-calpain) were important in defining, K(d). The mutations Lys10Thr in the N-terminal peptide, and Glu517Pro in, the domain linker peptide, reduced K(d) of m-calpain by 30% and 42%, respectively, revealing that these two regions are functionally important., The increased Ca(2+)-sensitivity of these mutants demonstrate that the, Lys10-Asp148 salt link and the short beta-sheet interaction involving, Glu517 are factors contributing to the high K(d) of m-calpain. Though, these two regions are physically remote from the active site and, Ca(2+)-binding site, they play significant roles in regulating the, response of calpain to Ca(2+). Differences in these interactions in, mu-calpain and in calpain 3 are also consistent with their progressively, lower K(d) values.
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<StructureSection load='1u5i' size='340' side='right'caption='[[1u5i]], [[Resolution|resolution]] 2.86&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1u5i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U5I FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.86&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u5i OCA], [https://pdbe.org/1u5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u5i RCSB], [https://www.ebi.ac.uk/pdbsum/1u5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u5i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CPNS1_RAT CPNS1_RAT] Regulatory subunit of the calcium-regulated non-lysosomal thiol-protease which catalyzes limited proteolysis of substrates involved in cytoskeletal remodeling and signal transduction.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u5i_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u5i ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The calpains are a family of cysteine proteases with closely related amino acid sequences, but a wide range of Ca(2+) requirements (K(d)). For m-calpain, K(d) is approximately 325microM, for mu-calpain it is approximately 50microM, and for calpain 3 it is not strictly known but may be approximately 0.1microM. On the basis of previous structure determination of m-calpain we postulated that two regions of the calpain large subunits, the N-terminal peptide (residues 1-20) and a domain III-IV linker peptide (residues 514-530 in m-calpain) were important in defining K(d). The mutations Lys10Thr in the N-terminal peptide, and Glu517Pro in the domain linker peptide, reduced K(d) of m-calpain by 30% and 42%, respectively, revealing that these two regions are functionally important. The increased Ca(2+)-sensitivity of these mutants demonstrate that the Lys10-Asp148 salt link and the short beta-sheet interaction involving Glu517 are factors contributing to the high K(d) of m-calpain. Though these two regions are physically remote from the active site and Ca(2+)-binding site, they play significant roles in regulating the response of calpain to Ca(2+). Differences in these interactions in mu-calpain and in calpain 3 are also consistent with their progressively lower K(d) values.
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==About this Structure==
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Activation of calpain by Ca2+: roles of the large subunit N-terminal and domain III-IV linker peptides.,Hosfield CM, Elce JS, Jia Z J Mol Biol. 2004 Oct 29;343(4):1049-53. PMID:15476820<ref>PMID:15476820</ref>
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1U5I is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Active as [http://en.wikipedia.org/wiki/Calpain-2 Calpain-2], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.53 3.4.22.53] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1U5I OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Activation of calpain by Ca2+: roles of the large subunit N-terminal and domain III-IV linker peptides., Hosfield CM, Elce JS, Jia Z, J Mol Biol. 2004 Oct 29;343(4):1049-53. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15476820 15476820]
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</div>
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[[Category: Calpain-2]]
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<div class="pdbe-citations 1u5i" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Rattus norvegicus]]
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[[Category: Elce, J.S.]]
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[[Category: Hosfield, C.M.]]
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[[Category: Jia, Z.]]
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[[Category: Pal, G.P.]]
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[[Category: calpain]]
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[[Category: crystal structure]]
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[[Category: sulfhydryl protease]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 03:51:29 2007''
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==See Also==
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*[[Calpain 3D structures|Calpain 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Elce JS]]
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[[Category: Hosfield CM]]
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[[Category: Jia Z]]
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[[Category: Pal GP]]

Current revision

Crystal Structure analysis of rat m-calpain mutant Lys10 Thr

PDB ID 1u5i

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