This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gqb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:59, 29 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2gqb.png|left|200px]]
 
-
<!--
+
==Solution Structure of a conserved unknown protein RPA2825 from Rhodopseudomonas palustris; (Northeast Structural Genomics Consortium Target RpT4; Ontario Centre for Structural Proteomics Target rp2812 )==
-
The line below this paragraph, containing "STRUCTURE_2gqb", creates the "Structure Box" on the page.
+
<StructureSection load='2gqb' size='340' side='right'caption='[[2gqb]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2gqb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GQB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gqb OCA], [https://pdbe.org/2gqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gqb RCSB], [https://www.ebi.ac.uk/pdbsum/2gqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gqb ProSAT], [https://www.topsan.org/Proteins/NESGC/2gqb TOPSAN]</span></td></tr>
-
{{STRUCTURE_2gqb| PDB=2gqb | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution Structure of a conserved unknown protein RPA2825 from Rhodopseudomonas palustris; (Northeast Structural Genomics Consortium Target RpT4; Ontario Centre for Structural Proteomics Target rp2812 )===
+
[https://www.uniprot.org/uniprot/Q6N5Z3_RHOPA Q6N5Z3_RHOPA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2GQB is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQB OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/2gqb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gqb ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Rhodopseudomonas palustris]]
[[Category: Rhodopseudomonas palustris]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Lemak, A.]]
+
[[Category: Lemak A]]
-
[[Category: Lukin, J A.]]
+
[[Category: Lukin JA]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Srisailam S]]
-
[[Category: Srisailam, S.]]
+
[[Category: Yee A]]
-
[[Category: Yee, A.]]
+
-
[[Category: Hypothetical protein conserved unknown protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:32:42 2008''
+

Current revision

Solution Structure of a conserved unknown protein RPA2825 from Rhodopseudomonas palustris; (Northeast Structural Genomics Consortium Target RpT4; Ontario Centre for Structural Proteomics Target rp2812 )

PDB ID 2gqb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools