This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2gyq
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2gyq.gif|left|200px]] | ||
| - | + | ==YcfI, a putative structural protein from Rhodopseudomonas palustris.== | |
| - | + | <StructureSection load='2gyq' size='340' side='right'caption='[[2gyq]], [[Resolution|resolution]] 1.40Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2gyq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GYQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GYQ FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gyq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gyq OCA], [https://pdbe.org/2gyq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gyq RCSB], [https://www.ebi.ac.uk/pdbsum/2gyq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gyq ProSAT], [https://www.topsan.org/Proteins/MCSG/2gyq TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q6N4M9_RHOPA Q6N4M9_RHOPA] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/2gyq_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Edwards | + | </jmolCheckbox> |
| - | [[Category: Evdokimova | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gyq ConSurf]. |
| - | [[Category: Joachimiak | + | <div style="clear:both"></div> |
| - | [[Category: Kudritska | + | __TOC__ |
| - | + | </StructureSection> | |
| - | [[Category: Osipiuk | + | [[Category: Large Structures]] |
| - | [[Category: Savchenko | + | [[Category: Rhodopseudomonas palustris CGA009]] |
| - | + | [[Category: Edwards A]] | |
| - | + | [[Category: Evdokimova E]] | |
| - | + | [[Category: Joachimiak A]] | |
| - | + | [[Category: Kudritska M]] | |
| - | + | [[Category: Osipiuk J]] | |
| - | + | [[Category: Savchenko A]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
YcfI, a putative structural protein from Rhodopseudomonas palustris.
| |||||||||||
