This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jrp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2jrp" [edit=sysop:move=sysop])
Current revision (19:04, 29 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jrp.png|left|200px]]
 
-
{{STRUCTURE_2jrp| PDB=2jrp | SCENE= }}
+
==Solution NMR Structure of YfgJ from Salmonella typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target StR86==
-
 
+
<StructureSection load='2jrp' size='340' side='right'caption='[[2jrp]]' scene=''>
-
===Solution NMR Structure of YfgJ from Salmonella typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target StR86===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2jrp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRP FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[2jrp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium_str._lt2 Salmonella enterica subsp. enterica serovar typhimurium str. lt2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRP OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jrp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrp OCA], [https://pdbe.org/2jrp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jrp RCSB], [https://www.ebi.ac.uk/pdbsum/2jrp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jrp ProSAT], [https://www.topsan.org/Proteins/NESGC/2jrp TOPSAN]</span></td></tr>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium str. lt2]]
+
</table>
-
[[Category: Acton, T B.]]
+
== Function ==
-
[[Category: Baran, M C.]]
+
[https://www.uniprot.org/uniprot/Q8ZN54_SALTY Q8ZN54_SALTY]
-
[[Category: Cort, J R.]]
+
== Evolutionary Conservation ==
-
[[Category: Cunningham, K.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Ding, K.]]
+
Check<jmol>
-
[[Category: Kennedy, M A.]]
+
<jmolCheckbox>
-
[[Category: Liu, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrp_consurf.spt"</scriptWhenChecked>
-
[[Category: Ma, L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Montelione, G T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
</jmolCheckbox>
-
[[Category: Nwosu, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jrp ConSurf].
-
[[Category: Owens, L.]]
+
<div style="clear:both"></div>
-
[[Category: Ramelot, T A.]]
+
__TOC__
-
[[Category: Rost, B.]]
+
</StructureSection>
-
[[Category: Swapna, G V.T.]]
+
[[Category: Large Structures]]
-
[[Category: Wang, H.]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Xiao, R.]]
+
[[Category: Acton TB]]
-
[[Category: Nesg]]
+
[[Category: Baran MC]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Cort JR]]
-
[[Category: Protein structure initiative]]
+
[[Category: Cunningham K]]
-
[[Category: Psi-2]]
+
[[Category: Ding K]]
-
[[Category: Structural genomic]]
+
[[Category: Kennedy MA]]
-
[[Category: Two-zinc binding protein]]
+
[[Category: Liu J]]
-
[[Category: Unknown function]]
+
[[Category: Ma L]]
 +
[[Category: Montelione GT]]
 +
[[Category: Nwosu C]]
 +
[[Category: Owens L]]
 +
[[Category: Ramelot TA]]
 +
[[Category: Rost B]]
 +
[[Category: Swapna GVT]]
 +
[[Category: Wang H]]
 +
[[Category: Xiao R]]

Current revision

Solution NMR Structure of YfgJ from Salmonella typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target StR86

PDB ID 2jrp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools