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2jwk

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Solution Structure of the periplasmic domain of TolR from Haemophilus influenzae

Structural highlights

2jwk is a 2 chain structure with sequence from Haemophilus influenzae. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TOLR_HAEIN Involved in the TonB-independent uptake of proteins (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

TolR is a part of the Pal/Tol system which forms a five-member, membrane-spanning, multiprotein complex that is conserved in Gram-negative bacteria. The Pal/Tol system helps to maintain the integrity of the outer membrane and has been proposed to be involved in several other cellular processes including cell division. Obtaining the structure of TolR is of interest not only to help explain the many proposed functions of the Pal/Tol system but also to gain an understanding of the TolR homologues ExbD and MotB and to provide more targets for antibacterial treatments. In addition, the structure may provide insights into how colicins and bacteriophages are able to enter the cell. Here we report the solution structure of the homodimeric periplasmic domain of TolR from Haemophilus influenzae, determined with conventional, NOE-based NMR spectroscopy, supplemented by extensive residual dipolar coupling measurements. A novel method for assembling the dimer from small-angle X-ray scattering data confirms the NMR-derived structure. To facilitate NMR spectral analysis, a TolR construct containing residues 59-130 of the 139-residue protein was created. The periplasmic domain of TolR forms a C 2-symmetric dimer consisting of a strongly curved eight-stranded beta-sheet, generating a large deep groove on one side, while four helices cover the other face of the sheet. The structure of the TolR dimer together with data from the literature suggests how the periplasmic domain of TolR is most likely oriented relative to the cytoplasmic membrane and how it may interact with other components of the Pal/Tol system, particularly TolQ.

The Periplasmic Domain of TolR from Haemophilus influenzae Forms a Dimer with a Large Hydrophobic Groove: NMR Solution Structure and Comparison to SAXS Data(,).,Parsons LM, Grishaev A, Bax A Biochemistry. 2008 Mar 11;47(10):3131-42. Epub 2008 Feb 12. PMID:18269247^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Parsons LM, Grishaev A, Bax A. The Periplasmic Domain of TolR from Haemophilus influenzae Forms a Dimer with a Large Hydrophobic Groove: NMR Solution Structure and Comparison to SAXS Data(,). Biochemistry. 2008 Mar 11;47(10):3131-42. Epub 2008 Feb 12. PMID:18269247 doi:http://dx.doi.org/10.1021/bi702283x

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jwk"

Categories: Haemophilus influenzae | Large Structures | Bax A | Parsons LM

@@ Line 1: / Line 1: @@
 ==Solution Structure of the periplasmic domain of TolR from Haemophilus influenzae==
-<StructureSection load='2jwk' size='340' side='right' caption='[[2jwk]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2jwk' size='340' side='right'caption='[[2jwk]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2jwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_influenzae"_lehmann_and_neumann_1896 "bacterium influenzae" lehmann and neumann 1896]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JWK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2jwk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JWK FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jwl|2jwl]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tolR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jwk OCA], [https://pdbe.org/2jwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jwk RCSB], [https://www.ebi.ac.uk/pdbsum/2jwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jwk ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jwk OCA], [http://pdbe.org/2jwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jwk RCSB], [http://www.ebi.ac.uk/pdbsum/2jwk PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/TOLR_HAEIN TOLR_HAEIN]] Involved in the TonB-independent uptake of proteins (By similarity).
+[https://www.uniprot.org/uniprot/TOLR_HAEIN TOLR_HAEIN] Involved in the TonB-independent uptake of proteins (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/2jwk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/2jwk_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 35: / Line 35: @@
 __TOC__
 </StructureSection>
-[[Category: Bacterium influenzae lehmann and neumann 1896]]
+[[Category: Haemophilus influenzae]]
-[[Category: Bax, A]]
+[[Category: Large Structures]]
-[[Category: Parsons, L M]]
+[[Category: Bax A]]
-[[Category: Inner membrane]]
+[[Category: Parsons LM]]
-[[Category: Membrane]]
-[[Category: Membrane protein]]
-[[Category: Periplasmic domain]]
-[[Category: Protein]]
-[[Category: Protein transport]]
-[[Category: Transmembrane]]
-[[Category: Transport]]

2jwk

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Current revision

Solution Structure of the periplasmic domain of TolR from Haemophilus influenzae

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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