This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yse

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:17, 29 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2yse.jpg|left|200px]]<br /><applet load="2yse" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2yse" />
 
-
'''Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1'''<br />
 
-
==About this Structure==
+
==Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1==
-
2YSE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSE OCA].
+
<StructureSection load='2yse' size='340' side='right'caption='[[2yse]]' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2yse]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YSE FirstGlance]. <br>
-
[[Category: Harada, T.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
[[Category: Kigawa, T.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yse FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yse OCA], [https://pdbe.org/2yse PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yse RCSB], [https://www.ebi.ac.uk/pdbsum/2yse PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yse ProSAT], [https://www.topsan.org/Proteins/RSGI/2yse TOPSAN]</span></td></tr>
-
[[Category: Koshiba, S.]]
+
</table>
-
[[Category: Ohnishi, S.]]
+
== Function ==
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[https://www.uniprot.org/uniprot/MAGI1_HUMAN MAGI1_HUMAN] May play a role as scaffolding protein at cell-cell junctions. May regulate acid-induced ASIC3 currents by modulating its expression at the cell surface (By similarity).
-
[[Category: Sato, M.]]
+
== Evolutionary Conservation ==
-
[[Category: Watanabe, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Yokoyama, S.]]
+
Check<jmol>
-
[[Category: magi-1]]
+
<jmolCheckbox>
-
[[Category: national project on protein structural and functional analyses]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/2yse_consurf.spt"</scriptWhenChecked>
-
[[Category: nmr]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: nppsfa]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein binding]]
+
</jmolCheckbox>
-
[[Category: riken structural genomics/proteomics initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yse ConSurf].
-
[[Category: rsgi]]
+
<div style="clear:both"></div>
-
[[Category: structural genomics]]
+
-
[[Category: ww domain]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:57:29 2008''
+
==See Also==
 +
*[[Guanylate kinase 3D structures|Guanylate kinase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Harada T]]
 +
[[Category: Kigawa T]]
 +
[[Category: Koshiba S]]
 +
[[Category: Ohnishi S]]
 +
[[Category: Sato M]]
 +
[[Category: Watanabe S]]
 +
[[Category: Yokoyama S]]

Current revision

Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1

PDB ID 2yse

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools