This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3v2b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:21, 29 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Human poly(adp-ribose) polymerase 15 (ARTD7, BAL3), macro domain 2 in complex with adenosine-5-diphosphoribose==
==Human poly(adp-ribose) polymerase 15 (ARTD7, BAL3), macro domain 2 in complex with adenosine-5-diphosphoribose==
-
<StructureSection load='3v2b' size='340' side='right' caption='[[3v2b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3v2b' size='340' side='right'caption='[[3v2b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3v2b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kh6 3kh6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V2B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V2B FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3v2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kh6 3kh6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V2B FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAL3, PARP15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_ADP-ribosyltransferase NAD(+) ADP-ribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.30 2.4.2.30] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v2b OCA], [https://pdbe.org/3v2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v2b RCSB], [https://www.ebi.ac.uk/pdbsum/3v2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v2b ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v2b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v2b RCSB], [http://www.ebi.ac.uk/pdbsum/3v2b PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PAR15_HUMAN PAR15_HUMAN]] Transcriptional repressor. Has ADP-ribosyltransferase activity.
+
[https://www.uniprot.org/uniprot/PAR15_HUMAN PAR15_HUMAN] Transcriptional repressor. Has ADP-ribosyltransferase activity.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3v2b" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Poly (ADP-ribose) polymerase|Poly (ADP-ribose) polymerase]]
+
*[[Poly(ADP-ribose) polymerase 3D structures|Poly(ADP-ribose) polymerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Large Structures]]
-
[[Category: Berglund, H]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bountra, C]]
+
[[Category: Berglund H]]
-
[[Category: Collins, R]]
+
[[Category: Bountra C]]
-
[[Category: Edwards, A M]]
+
[[Category: Collins R]]
-
[[Category: Flodin, S]]
+
[[Category: Edwards AM]]
-
[[Category: Flores, A]]
+
[[Category: Flodin S]]
-
[[Category: Graslund, S]]
+
[[Category: Flores A]]
-
[[Category: Hammarstrom, M]]
+
[[Category: Graslund S]]
-
[[Category: Johansson, I]]
+
[[Category: Hammarstrom M]]
-
[[Category: Kallas, A]]
+
[[Category: Johansson I]]
-
[[Category: Karlberg, T]]
+
[[Category: Kallas A]]
-
[[Category: Kotenyova, T]]
+
[[Category: Karlberg T]]
-
[[Category: Kotzcsh, A]]
+
[[Category: Kotenyova T]]
-
[[Category: Kraulis, P]]
+
[[Category: Kotzcsh A]]
-
[[Category: Moche, M]]
+
[[Category: Kraulis P]]
-
[[Category: Nielsen, T K]]
+
[[Category: Moche M]]
-
[[Category: Nordlund, P]]
+
[[Category: Nielsen TK]]
-
[[Category: Nyman, T]]
+
[[Category: Nordlund P]]
-
[[Category: Persson, C]]
+
[[Category: Nyman T]]
-
[[Category: Roos, A K]]
+
[[Category: Persson C]]
-
[[Category: Structural genomic]]
+
[[Category: Roos AK]]
-
[[Category: Schuler, H]]
+
[[Category: Schuler H]]
-
[[Category: Schutz, P]]
+
[[Category: Schutz P]]
-
[[Category: Siponen, M I]]
+
[[Category: Siponen MI]]
-
[[Category: Thorsell, A G]]
+
[[Category: Thorsell AG]]
-
[[Category: Tresaugues, L]]
+
[[Category: Tresaugues L]]
-
[[Category: Weigelt, J]]
+
[[Category: Van den berg S]]
-
[[Category: Welin, M]]
+
[[Category: Weigelt J]]
-
[[Category: Wisniewska, M]]
+
[[Category: Welin M]]
-
[[Category: Berg, S Van den]]
+
[[Category: Wisniewska M]]
-
[[Category: Adp-ribose]]
+
-
[[Category: Adp-ribosylation]]
+
-
[[Category: B-aggressive lymphoma protein 3]]
+
-
[[Category: Bal3]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Nucleus]]
+
-
[[Category: Sgc]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transferase]]
+

Current revision

Human poly(adp-ribose) polymerase 15 (ARTD7, BAL3), macro domain 2 in complex with adenosine-5-diphosphoribose

PDB ID 3v2b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools