This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3x0y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:23, 29 May 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='3x0y' size='340' side='right'caption='[[3x0y]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3x0y' size='340' side='right'caption='[[3x0y]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3x0y]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0Y FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3x0y]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0Y FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3x0x|3x0x]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0y OCA], [https://pdbe.org/3x0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0y RCSB], [https://www.ebi.ac.uk/pdbsum/3x0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0y ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0y OCA], [https://pdbe.org/3x0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0y RCSB], [https://www.ebi.ac.uk/pdbsum/3x0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0y ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DSZC1_RHOER DSZC1_RHOER] Catalyzes the first step of the '4S' desulfurization pathway that removes covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) in a stepwise manner (PubMed:11229908, Ref.2). Also acts on thioxanthen-9-one and 4,6-dimethyl DBT and 2,8-dimethyl DBT (Ref.2).<ref>PMID:11229908</ref> <ref>PMID:25627402</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Guan, L J]]
+
[[Category: Rhodococcus erythropolis]]
-
[[Category: Lee, W C]]
+
[[Category: Guan LJ]]
-
[[Category: Ohtsuka, J]]
+
[[Category: Lee WC]]
-
[[Category: Tanokura, M]]
+
[[Category: Ohtsuka J]]
-
[[Category: Wang, S P]]
+
[[Category: Tanokura M]]
-
[[Category: Acyl-coa dehydrogenase domain]]
+
[[Category: Wang SP]]
-
[[Category: Dbt monooxygenase]]
+
-
[[Category: Desulfurization]]
+
-
[[Category: Fmn-dependent]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1

PDB ID 3x0y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools