User:Nathan Marohn/Sandbox 2

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==''Glucose-dependent insulinotropic polypeptide receptor (GIP-R)''==
==''Glucose-dependent insulinotropic polypeptide receptor (GIP-R)''==
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<StructureSection load='7ra3' size='350' frame='true' side='right' caption='GIP-R 7RA3' scene='10/1037518/Gipr_domains/5'>
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<StructureSection load='7ra3' size='350' frame='true' side='right' caption='GIP-R 7RA3' scene='10/1043643/Gipr_domains/3'>
== Introduction ==
== Introduction ==
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'''Glucose-dependent insulinotropic polypeptide receptor (GIP-R)''' is a G-protein coupled receptor stimulated by gastric inhibitory peptide (GIP). is released from endocrine cells in the small intestine and binds to GIP-R, which is commonly expressed in pancreatic ß-cells, adipose tissue, osteoblasts, and the hypothalamus. GIP-R was biochemically discovered in 1969 and its structure was later determined using [https://en.wikipedia.org/wiki/Cryogenic_electron_microscopy cryo-electron microscopy].
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'''Glucose-dependent insulinotropic polypeptide receptor (GIP-R)''' is a [https://en.wikipedia.org/wiki/G_protein-coupled_receptor G-protein coupled receptor] stimulated by gastric inhibitory peptide (GIP). GIP is released from endocrine cells in the small intestine and binds to GIP-R, commonly expressed in pancreatic ß-cells, adipose tissue, osteoblasts, and the hypothalamus. GIP-R was biochemically discovered in 1969 and its structure was later determined using [https://en.wikipedia.org/wiki/Cryogenic_electron_microscopy cryo-electron microscopy].
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The GIP-R plays a key role in mitigating Type II diabetes symptoms by promoting both weight loss and [https://en.wikipedia.org/wiki/Insulin insulin] secretion. Type II diabetes, sometimes referred to as insulin resistance, is caused by two variables: a decrease in the response of insulin-sensitive cells and a decrease in insulin secretion from beta cells. Insulin is required for glucose uptake in cells, lowering blood glucose levels. Without adequate insulin secretion, cells do not receive enough glucose, and blood glucose levels remain unhealthily high. Excess blood glucose is stored in the liver as glycogen and can be converted to fatty acids stored in adipose tissue.
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== Function & Mechanism ==
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When the <scene name='10/1043643/Overview_gip_gip-r/1'>GIP ligand binds to the receptor</scene>, a GPCR pathway is activated, initiating a cascade of enzymes<ref name="Mayendraraj"/>. After binding to GIP, GIP-R undergoes a conformational change that allows the G-alpha subunit to dissociate from the GPCR and travel down the phospholipid bilayer. A palmitic fatty acid keeps the G-alpha subunit tightly bound to the lipid bilayer as it travels to the target enzyme, adenylyl cyclase. The phosphorylation of adenylyl cyclase produces the second messenger, [https://en.wikipedia.org/wiki/Cyclic_adenosine_monophosphate cyclic adenosine monophosphate], (cAMP). cAMP then activates the second enzyme, [https://en.wikipedia.org/wiki/Protein_kinase_A Protein Kinase A], (PKA), which inhibits potassium channels and activates calcium channels, causing an influx of Ca2+ ions into the cell. PKA also activates a transcription factor (CREB)<ref name="Dalle"/> that promotes insulin release from the cell. The release of insulin into the bloodstream promotes the uptake of circulatory glucose into target tissues.
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GIP-R functions to alleviate Type II diabetes symptoms by using a GPCR to promote insulin secretion from beta cells. Increasing insulin secretion increases cellular glucose absorption. This results in lower blood glucose levels and less glucose being converted to fat. GIP-R can be activated naturally by the GIP ligand or a (dual) agonist such as Tirzepatide
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GIP-R plays a key role in mitigating Type II diabetes symptoms by promoting both weight loss and insulin secretion<ref name="Seino"/>. [https://en.wikipedia.org/wiki/Type_2_diabetes Type II diabetes], or insulin resistance, is caused by two variables: a decrease in insulin-sensitive cell responses and insulin secretion from beta cells. Without adequate insulin secretion, cellular glucose uptake is diminished and blood glucose levels remain unhealthily high. Excess blood glucose is stored in the liver as glycogen, which is converted to fatty acids in adipose tissue. By reducing blood glucose levels, GIP-R acts to reduce excess storage of fat. GIP-R can be activated by either the natural ligand, GIP, or a synthetic agonist, such as Tirzepatide. Tirzepatide binds to both GIP-R and [https://en.wikipedia.org/wiki/Glucagon-like_peptide-1_receptor GLP-R] (a GPCR with similar functionality). By binding to both receptors, Tirzepatide results in greater signal transduction, thus, a higher yield of insulin secretion.
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== Function & Mechanism ==
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== Ligands ==
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When the <scene name='10/1037512/Overview_gip_gip-r/2'>GIP ligand is bound to GIP-R</scene>, a GPCR pathway is activated and a cascade effect is initiated. When the GIP ligand is bound, the beta-adrenergic receptor induces a conformational change, allowing for the G-alpha subunit to travel down the phospholipid bilayer, dissociating from the G-beta and G-gamma subunits. A palmitic fatty acid keeps the G-alpha subunit tightly bound to the lipid bilayer during its journey to the first enzyme, adenylyl cyclase. The phosphorylation of adenylyl cyclase produces the second messenger, cyclic adenosine monophosphate (cAMP). cAMP then activates the second enzyme, Protein Kinase A (PKA), which inhibits the potassium channel, and increases the calcium channels, allowing calcium to enter the cell. PKA also activates a transcription factor (CREB) that induces transcription allowing the release of insulin. The release of insulin into the bloodstream promotes the uptake of circulatory insulin into target tissues. This pathway reduces blood sugar levels in the body.
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The natural ligand, <scene name='10/1043643/Gip_ligand/1'>GIP</scene>, and synthetically made medication, <scene name='10/1043643/Tirzepatide/1'>Tirzepatide</scene>, bind to GIP-R similarly to produce similar responses. The N-termini of each ligand, residues 1-15, binds to the transmembrane domain of GIP-R. Residues 15-30 of each ligand near the C-termini interact with the extracellular domain of GIP-R. Several modifications were made to Tirzepatide to improve its delivery and affinity to GIP-R<ref name="Sun"/>. At position 2, the alanine residue was modified to a 2-aminoisobutyric residue to prevent its inactivation by peptidase [https://en.wikipedia.org/wiki/Dipeptidyl_peptidase-4 DPP-4], which cleaves the ligand between residues 2 and 3 (Fig. 1). This modification prolongs the cellular signaling induced by Tirzepatide bound to GIP-R. Residues 7 and 18 were modified in Tirzepatide to increase the affinity of the peptide for GIP-R (Fig. 1). Lastly, a glutamine residue was modified in Tirzepatide to a lipid-modified lysine at position 20 for transport in the blood serum via an [https://en.wikipedia.org/wiki/Albumin albumin] protein (Fig. 1).
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[[Image:SequenceAllignment.png|1000 px|center|thumb|Figure 1. Sequence alignment of GIP and Tirzepatide<ref name="Zhao"/>]]
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<scene name='10/1037518/Gip_transmembrane_intrxn/10'>Transmembrane Residue Interactions</scene>
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== GIP-R Domains ==
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<scene name='10/1037518/Gipr_domains/5'>TextToBeDisplayed</scene>
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<scene name='10/1043643/Gipr_domains/3'>GIP-R</scene> consists of three unique domains, each of which is sequestered in a different cellular environment. The extracellular domain consists of two helices and two loops that extend into the extracellular fluid and interact with the ligand. The transmembrane domain consists of seven alpha-helices bound in the cell membrane that interact with the N-terminus of the ligand. The cytoplasmic domain extends into the cytoplasm and interacts with the associated G-protein.
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<scene name='10/1037518/Gip_transmembrane_intrxn/10'>TextToBeDisplayed</scene>
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<scene name='10/1040161/Ribbon_test/5'>G-protein - GIPR Interface</scene>
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<scene name='10/1040161/Tirzepatide/6'>Tirzepatide Ligand</scene>
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<scene name='10/1040161/Peptide_20/1'>Peptide 20</scene>
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== Structure ==
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Along with a multitude of hydrophobic interactions at the cell membrane interface, two key hydrogen bonds within the <scene name='10/1043643/Ribbon_test/1'>alpha-subunit</scene> sequester the G-protein to the receptor. The carbonyl oxygen of the L393 backbone and the sidechain of E392 of the G-protein form hydrogen bonds with the sidechain of R338 and amide nitrogen of N396 of GIP-R, respectively. The conformational change in the receptor induced by ligand-binding breaks these hydrogen bonds, allowing the G-protein to dissociate from GIP-R and continue its signaling pathway.
=== Transmembrane Domain ===
=== Transmembrane Domain ===
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Y1 on the N-terminal end of the GIP ligand is crucial for ligand binding. Analogs<ref name="Sun"/> of GIP containing a mutation at residue 1 resulted in no ligand binding. <scene name='10/1043643/Gip_transmembrane_intrxn/1'>Y1 of GIP</scene> forms a hydrogen bond to Q224 on GIP-R, pulling the GIP ligand deep into the transmembrane domain. In addition, Y1 parallel pi-stacks with W296 on GIP-R, further increasing the affinity of the ligand for the receptor. For these reasons, Y1 is conserved in Tirzepatide.
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There are a couple of important interactions that occur with the binding of both the GIP and Tirzepatide ligands.
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A key mutation in Tirzepatide is I7T. The mutated <scene name='10/1043643/Tirzepatide_transmembrane/2'>T7 of Tirzepatide</scene> can form a hydrogen bond with R190 of GIP-R, an interaction that was not possible with the natural I7 residue. Due to this hydrogen bonding interaction, the alcohol group on Y1 of the ligand is tilted towards R190 and Q220, mediated by polar water molecules<ref name="Sun"/>. The additional interactions increase the affinity of Tirzepatide for GIP-R, which induces a greater cellular response than the natural ligand GIP.
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Specifically, with the GIP ligand, Y1 on the N-term is a crucial residue that helps the ligand bind to the receptor. Y1 hydrogen bonds to Q224 on the receptor allowing for a tight binding deep in the transmembrane. Y1 also has parallel pi-stacking with W296 on the receptor promoting further bonding of the ligand. Analogs of the GIP ligand were made without Y1, and no binding in the receptor occurred, validating the importance of this specific residue. Additionally, another important factor is I7 on the GIP ligand which is mutated in the Tirzepatide ligand. Being hydrophobic, I7 does not hydrogen bond to R190 on the receptor as it does in the Tirzepatide ligand.
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=== Extracellular Domain ===
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In the extracellular domain, extensive pi-stacking occurs between <scene name='10/1043643/Gip_ecd_pi_stacking/3'>GIP to GIP-R</scene> and <scene name='10/1043643/Tirz_gipr_ecd_pi_stacking/1'>Tirzepatide to GIP-R</scene>. Aromatic residues F22 and W25 are conserved on Tirzepatide to maintain strong hydrophobic interactions with Y36 and W39 on GIP-R. However, Tirzepatide contains a key H18A mutation<ref name="Sun"/> that increases the affinity of the ligand compared to GIP. Although this mutation inactivates a hydrogen bond previously formed by H18, it increases Tirzepatide’s affinity for the GLP-R by reducing steric clashing and allowing the ligand to bind deeper into the receptor.
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Specifically, with the Tirzepatide ligand, Y1 still has the same parallel pi-stacking interaction with W296 of the receptor. Furthermore, as stated above, the seventh residue on the Tirzepatide ligand is mutated to a T7, which induces hydrogen bonding between R190, unlike in the GIP receptor. Due to this hydrogen bonding induction, and with additional water-mediated polarization, the alcohol group on Y1 of the ligand points towards R190 and Q220 causing some hydrophilic interactions. All of these interactions help bind the ligand tightly in the receptor for activation to occur.
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=== GIP-R Bound to GIP vs. Tirzepatide ===
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The natural GIP ligand and the synthetic Tirzepatide ligand do not bind to the receptor analogously. The modifications applied to Tirzepatide caused a shift in the orientation of ligand binding (Fig. 2). Specifically, the H18A and I7T mutations shaped the synthetic ligand to bind differently than the natural ligand, in which the extracellular domain of GIP-R had to adjust to fit the new binding angle. Ultimately, the binding configuration induced by Tirzepatide tethers the ligand deeper into the receptor transmembrane domain, increasing its affinity for the receptor (Fig. 2). [[Image:ProtoOverlay1.png|400 px|center|thumb|Figure 2. Overlay of GIP (tan with dark gray GIP-R) and Tirzepatide (green with light gray GIP-R) bound to GIP-R]]
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=== Extracellular Domain ===
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== Future Implications ==
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=== Peptide 20 ===
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Peptide 20 is a tri-acting agonist of GIP, GLP (glucagon-like peptide), and GCG (glucagon). This tri-agonist drug maximizes the metabolic benefits of the GIP and GLP ligands while simultaneously increasing energy expenditure by binding to the GCG-receptor. In experimental studies<ref name="Zhao"/>, administration of peptide 20 to rats caused a reduction in body weight and blood glucose levels in addition to improving glucose tolerance. Administration of peptide 20 did not disrupt the architecture of pancreatic islets.
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Peptide 20 adopts a helical structure with the first 15 residues buried in the transmembrane region and residues 16-30 recognized by the extracellular domain of each of the three receptors. The N-terminus was fairly conserved compared to each natural ligand, however, the I7T mutation found in Tirzepatide was utilized in peptide 20 to increase the affinity of the ligand to each receptor (Fig. 3). Peptide 20 also utilized the H18A substitution found in Tirzepatide, which reduced steric clashing in the extracellular domain (Fig. 3). These mutations found in peptide 20 increase affinity for the substrate, increasing cellular signaling pathways. The most impressive structural feature of peptide 20 binding is the lipidation at K10. After the substitution of a lysine residue at position 10, a 16-C palmitic chain was added and linked by a γ-carboxylate spacer. The hydrophobic chain inserts itself between TM1 and TM2, stabilizing peptide binding. The <scene name='10/1043643/Peptide_20/2'>lipidation of K10</scene> increased cAMP accumulation by almost 1300-fold<ref name="Zhao"/>.
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K10 lipidation provides a fresh clue for peptide ligand design for G-protein coupled receptors. Multi-targeting agonists, such as peptide 20, improve energy metabolism without causing hypoglycemia, as proved with trials on mice. Profiling the receptors on the cell membrane of a given individual at any stage of their disease, when paired with multi-targeting drugs, allows for personalized therapeutic advantages. Further research into multi-targeting drugs opens the doors to manipulating metabolic pathways and provides solutions to diseases, such as type II diabetes.
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In the extracellular domain, there is extensive pi-stacking between both <scene name='10/1037518/Gip_ecd_pi_stacking/1'>GIP to GIP-R</scene> and <scene name='10/1037512/Tirz_gipr_ecd_pi_stacking/5'>Tirzepatide to GIP-R.</scene>. The aromatic residues F22 and W25 are conserved on Tirzepatide to maintain those strong hydrophobic interactions with Y36 and W39 on GIP-R. From the original GIP ligand, Tirzeptide has a H18A mutation. While this mutation does result in the loss of a hydrogen bond between the ligand and the receptor, it likely increases Tirzepatide’s affinity for the GLP-R. The I7T mutation on Tirzepatide allowed the ligand to bind deeper in the GIP-R active site. The deeper binding slightly strengthened the pi-stacking interactions present between Tirzepatide and GIP-R by decreasing the distance between the residues.
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== Additional Student Contributors ==
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Emma Edwards,
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Breckin Judd
</StructureSection>
</StructureSection>
== References ==
== References ==
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<ref name="Dalle">PMID: 21488836</ref>
<ref name="Mayendraraj">PMID: 35065096</ref>
<ref name="Mayendraraj">PMID: 35065096</ref>
<ref name="Seino">PMID: 24843404</ref>
<ref name="Seino">PMID: 24843404</ref>
<ref name="Sun">PMID: 35333651</ref>
<ref name="Sun">PMID: 35333651</ref>
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<ref name="Yaqub">PMID: 20061446</ref>
 
<ref name="Zhao">PMID: 35217653</ref>
<ref name="Zhao">PMID: 35217653</ref>
<references/>
<references/>

Current revision

Glucose-dependent insulinotropic polypeptide receptor (GIP-R)

GIP-R 7RA3

Drag the structure with the mouse to rotate

References

[2] [1] [3] [4] [5]

  1. 1.0 1.1 Mayendraraj A, Rosenkilde MM, Gasbjerg LS. GLP-1 and GIP receptor signaling in beta cells interactions and co-stimulation. Peptides. 2022 May;151:170749. PMID:35065096 doi:10.1016/j.peptides.2022.170749
  2. 2.0 2.1 Dalle S, Quoyer J, Varin E, Costes S. Roles and regulation of the transcription factor CREB in pancreatic β -cells. Curr Mol Pharmacol. 2011 Nov;4(3):187-95. PMID:21488836 doi:10.2174/1874467211104030187
  3. 3.0 3.1 Seino Y, Fukushima M, Yabe D. GIP and GLP-1, the two incretin hormones: Similarities and differences. J Diabetes Investig. 2010 Apr 22;1(1-2):8-23. PMID:24843404 doi:10.1111/j.2040-1124.2010.00022.x
  4. 4.0 4.1 4.2 4.3 4.4 Sun B, Willard FS, Feng D, Alsina-Fernandez J, Chen Q, Vieth M, Ho JD, Showalter AD, Stutsman C, Ding L, Suter TM, Dunbar JD, Carpenter JW, Mohammed FA, Aihara E, Brown RA, Bueno AB, Emmerson PJ, Moyers JS, Kobilka TS, Coghlan MP, Kobilka BK, Sloop KW. Structural determinants of dual incretin receptor agonism by tirzepatide. Proc Natl Acad Sci U S A. 2022 Mar 29;119(13):e2116506119. PMID:35333651 doi:10.1073/pnas.2116506119
  5. 5.0 5.1 5.2 5.3 Zhao F, Zhou Q, Cong Z, Hang K, Zou X, Zhang C, Chen Y, Dai A, Liang A, Ming Q, Wang M, Chen LN, Xu P, Chang R, Feng W, Xia T, Zhang Y, Wu B, Yang D, Zhao L, Xu HE, Wang MW. Structural insights into multiplexed pharmacological actions of tirzepatide and peptide 20 at the GIP, GLP-1 or glucagon receptors. Nat Commun. 2022 Feb 25;13(1):1057. PMID:35217653 doi:10.1038/s41467-022-28683-0

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