|
|
(2 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| | | |
| ==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)== | | ==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)== |
- | <StructureSection load='5jxv' size='340' side='right' caption='[[5jxv]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='5jxv' size='340' side='right'caption='[[5jxv]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptococcus_equisimilis"_frost_and_engelbrecht_1936_(human_strains) "streptococcus equisimilis" frost and engelbrecht 1936 (human strains)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_dysgalactiae_subsp._equisimilis Streptococcus dysgalactiae subsp. equisimilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JXV FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">WH79_02070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119602 "Streptococcus equisimilis" Frost and Engelbrecht 1936 (human strains)])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solid-state NMR</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [https://pdbe.org/5jxv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [https://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
Line 20: |
Line 20: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Akopjana, I]] | + | [[Category: Large Structures]] |
- | [[Category: Andreas, L B]] | + | [[Category: Streptococcus dysgalactiae subsp. equisimilis]] |
- | [[Category: Bertarello, A]] | + | [[Category: Akopjana I]] |
- | [[Category: Emsley, L]] | + | [[Category: Andreas LB]] |
- | [[Category: Engelke, F]] | + | [[Category: Bertarello A]] |
- | [[Category: Herrmann, T]] | + | [[Category: Cala-De Paepe D]] |
- | [[Category: Jaudzems, K]] | + | [[Category: Emsley L]] |
- | [[Category: Knott, B]] | + | [[Category: Engelke F]] |
- | [[Category: Kotelovica, S]] | + | [[Category: Herrmann T]] |
- | [[Category: Lalli, D]] | + | [[Category: Jaudzems K]] |
- | [[Category: Lesage, A]] | + | [[Category: Knott B]] |
- | [[Category: Marchand, T Le]]
| + | [[Category: Kotelovica S]] |
- | [[Category: Paepe, D Cala-De]] | + | [[Category: Lalli D]] |
- | [[Category: Pintacuda, G]] | + | [[Category: Le Marchand T]] |
- | [[Category: Stanek, J]] | + | [[Category: Lesage A]] |
- | [[Category: Tars, K]] | + | [[Category: Pintacuda G]] |
- | [[Category: Wegner, S]] | + | [[Category: Stanek J]] |
- | [[Category: Alpha beta]]
| + | [[Category: Tars K]] |
- | [[Category: Globular]]
| + | [[Category: Wegner S]] |
- | [[Category: Immune system]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Protein structure determination by proton-detected magic-angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of (1)H-(1)H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.
Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.,Andreas LB, Jaudzems K, Stanek J, Lalli D, Bertarello A, Le Marchand T, Cala-De Paepe D, Kotelovica S, Akopjana I, Knott B, Wegner S, Engelke F, Lesage A, Emsley L, Tars K, Herrmann T, Pintacuda G Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9187-92. doi:, 10.1073/pnas.1602248113. Epub 2016 Aug 3. PMID:27489348[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Andreas LB, Jaudzems K, Stanek J, Lalli D, Bertarello A, Le Marchand T, Cala-De Paepe D, Kotelovica S, Akopjana I, Knott B, Wegner S, Engelke F, Lesage A, Emsley L, Tars K, Herrmann T, Pintacuda G. Structure of fully protonated proteins by proton-detected magic-angle spinning NMR. Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9187-92. doi:, 10.1073/pnas.1602248113. Epub 2016 Aug 3. PMID:27489348 doi:http://dx.doi.org/10.1073/pnas.1602248113
|