Entertaining PDB codes
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| - | Here are some entertaining PDB codes<ref>Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.</ref>. | + | Here are some entertaining (amusing, humorous, funny) PDB codes<ref>Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.</ref>. |
*[[1and]] | *[[1and]] | ||
| + | *[[1aok]] appears to be A OK. | ||
*[[1ask]] | *[[1ask]] | ||
| + | *[[1atp]] includes ATP (but [[2atp]] does not). | ||
*[[1bad]] yes, its a theoretical model. | *[[1bad]] yes, its a theoretical model. | ||
*[[1bah]] | *[[1bah]] | ||
*[[1big]] has only 37 amino acids. | *[[1big]] has only 37 amino acids. | ||
*[[1bra]] has a binding pocket. | *[[1bra]] has a binding pocket. | ||
| + | *[[1bob]]'s 54 C-terminal residues were bobbed off. | ||
*[[1boo]] | *[[1boo]] | ||
*[[1bye]] | *[[1bye]] | ||
| + | *[[1bzo]] missing a vowel. | ||
| + | *[[1cif]] is available in PDB format. | ||
*[[1dam]] | *[[1dam]] | ||
*[[1dog]] | *[[1dog]] | ||
*[[1dud]] has an interesting trimeric biological unit. | *[[1dud]] has an interesting trimeric biological unit. | ||
| + | *[[1dul]] is very interesting. | ||
*[[1dum]] | *[[1dum]] | ||
*[[1eat]] concerns an orally active compound. | *[[1eat]] concerns an orally active compound. | ||
*[[1ego]] | *[[1ego]] | ||
*[[1faq]] | *[[1faq]] | ||
| + | *[[1foo]] | ||
*[[1god]] | *[[1god]] | ||
*[[1goo]] | *[[1goo]] | ||
| + | *[[1hmm]] | ||
*[[1hot]] | *[[1hot]] | ||
*[[1ion]] contains Mg++ | *[[1ion]] contains Mg++ | ||
| + | *[[1jim]] has been jimmied with sequence insertion codes. | ||
| + | *[[1joe]] | ||
*[[1lie]] | *[[1lie]] | ||
*[[1loo]] | *[[1loo]] | ||
| + | *[[1nmr]] was solved by solution NMR. Compare with 2nmr and 1xrd. | ||
*[[1oca]] | *[[1oca]] | ||
*[[1off]] | *[[1off]] | ||
| Line 26: | Line 37: | ||
*[[1ooh]] | *[[1ooh]] | ||
*[[1oop]] | *[[1oop]] | ||
| - | *[[1pdb]] | + | *[[1pdb]] is available in CIF format. |
*[[1pqs]] | *[[1pqs]] | ||
*[[1rid]] (turned out to be fraudulent) | *[[1rid]] (turned out to be fraudulent) | ||
| Line 34: | Line 45: | ||
*[[1wiz]] | *[[1wiz]] | ||
*[[1wow]] | *[[1wow]] | ||
| + | *[[1xrd]] was solved by solution NMR. Compare with 1nmr, 2xrd. | ||
*[[1xyz]] | *[[1xyz]] | ||
| + | *[[1zap]] is a protease. | ||
*[[1zyx]] | *[[1zyx]] | ||
*[[1zzz]] | *[[1zzz]] | ||
| + | *[[2adp]] has no ADP, but [[1atp]] has ATP. | ||
| + | *[[2bed]] was eventually put to bed. | ||
| + | *[[2cuz]] has related entries (REMARK 900). | ||
*[[2err]] | *[[2err]] | ||
| + | *[[2lok]] was released in 2012. | ||
| + | *[[2nmr]], [[3nmr]], [[4nmr]], [[5nmr]], [[6nmr]], [[7nmr]] were all solved by X-ray diffraction, but check out 1nmr. | ||
*[[2pee]] | *[[2pee]] | ||
*[[2poo]] | *[[2poo]] | ||
| - | *[[3ric]] Surely a personal favorite! | + | *[[2xrd]], [[4xrd]], [[5xrd]] were all solved by X-ray diffraction. Compare with 1xrd, 1nmr. |
| - | *[[4fit]] | + | *[[3ric]] Surely a personal favorite for [[User:Eric Martz]]! |
| + | *[[4arf]] Pet friendly. | ||
| + | *[[4fit]] Don't forfeit your histidine triad (HIT)! | ||
| + | *[[4you]] Just for you! | ||
*[[3way]] | *[[3way]] | ||
*[[6pax]] | *[[6pax]] | ||
Current revision
Here are some entertaining (amusing, humorous, funny) PDB codes[1].
- 1and
- 1aok appears to be A OK.
- 1ask
- 1atp includes ATP (but 2atp does not).
- 1bad yes, its a theoretical model.
- 1bah
- 1big has only 37 amino acids.
- 1bra has a binding pocket.
- 1bob's 54 C-terminal residues were bobbed off.
- 1boo
- 1bye
- 1bzo missing a vowel.
- 1cif is available in PDB format.
- 1dam
- 1dog
- 1dud has an interesting trimeric biological unit.
- 1dul is very interesting.
- 1dum
- 1eat concerns an orally active compound.
- 1ego
- 1faq
- 1foo
- 1god
- 1goo
- 1hmm
- 1hot
- 1ion contains Mg++
- 1jim has been jimmied with sequence insertion codes.
- 1joe
- 1lie
- 1loo
- 1nmr was solved by solution NMR. Compare with 2nmr and 1xrd.
- 1oca
- 1off
- 1ohm
- 1ooh
- 1oop
- 1pdb is available in CIF format.
- 1pqs
- 1rid (turned out to be fraudulent)
- 1sux
- 1wad
- 1who
- 1wiz
- 1wow
- 1xrd was solved by solution NMR. Compare with 1nmr, 2xrd.
- 1xyz
- 1zap is a protease.
- 1zyx
- 1zzz
- 2adp has no ADP, but 1atp has ATP.
- 2bed was eventually put to bed.
- 2cuz has related entries (REMARK 900).
- 2err
- 2lok was released in 2012.
- 2nmr, 3nmr, 4nmr, 5nmr, 6nmr, 7nmr were all solved by X-ray diffraction, but check out 1nmr.
- 2pee
- 2poo
- 2xrd, 4xrd, 5xrd were all solved by X-ray diffraction. Compare with 1xrd, 1nmr.
- 3ric Surely a personal favorite for User:Eric Martz!
- 4arf Pet friendly.
- 4fit Don't forfeit your histidine triad (HIT)!
- 4you Just for you!
- 3way
- 6pax
Notes
- ↑ Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.
