4ztt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "4ztt" [edit=sysop:move=sysop])
Current revision (04:06, 5 October 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4ztt is ON HOLD
+
==Crystal structures of ferritin mutants reveal diferric-peroxo intermediates==
 +
<StructureSection load='4ztt' size='340' side='right'caption='[[4ztt]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4ztt]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH1 Escherichia coli DH1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZTT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZTT FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1L4B:(2~{S})-2-azanyl-5-nitroso-5-oxidanylidene-pentanoic+acid'>A1L4B</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FEO:MU-OXO-DIIRON'>FEO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PER:PEROXIDE+ION'>PER</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ztt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ztt OCA], [https://pdbe.org/4ztt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ztt RCSB], [https://www.ebi.ac.uk/pdbsum/4ztt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ztt ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FTNA_ECOLI FTNA_ECOLI] Iron-storage protein.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Iron and oxygen chemistry is mediated by iron proteins for many biological functions. Carboxylate-bridged diiron enzymes including ferritin have the common mechanism of oxygen activation via peroxodiferric intermediates. However, the route for iron uptake and the structural identification of intermediates still remain incomplete. The 4-fold symmetry channel of Helicobacter pylori ferritin was previously proposed as the iron-uptake route in eubacteria, but the amino acid residues at the 4-fold channel are not highly conserved. Here, we show evidence for a short path for iron uptake from His93 on the surface to the ferroxidase center in H. pylori ferritin and Escherichia coli ferritin. The amino acid residues along this path are highly conserved in Gram-negative bacteria and some archaea, and the mutants containing S20A and H93L showed significantly decreased iron oxidation. Surprisingly, the E. coli ferritin S20A crystal structure showed oxygen binding and side-on, symmetric mu-eta2:eta2 peroxodiferric and oxodiferric intermediates. The results provide the structural basis for understanding the chemical nature of intermediates in iron oxidation in bacteria and some of archaea.
-
Authors: Sella Kim, Yi-Ho Park, Sang Won Jung, Jong Hyeon Seok, Yeon Bin Chung, Dan Bi Lee, Giri Gowda, Ji-Hye Lee, Kang Rok Han, Art E.Cho, Cheolju Lee, Mi Sook Chung, Kyung Hyun Kim
+
Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.,Kim S, Lee JH, Seok JH, Park YH, Jung SW, Cho AE, Lee C, Chung MS, Kim KH J Mol Biol. 2016 Dec 4;428(24 Pt B):5007-5018. doi: 10.1016/j.jmb.2016.10.022., Epub 2016 Oct 21. PMID:27777002<ref>PMID:27777002</ref>
-
Description: Crystal structures of ferritin mutants reveal diferric-peroxo intermediates
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Sella Kim, Yi-Ho Park, Sang Won Jung, Jong Hyeon Seok, Yeon Bin Chung, Dan Bi Lee, Giri Gowda, Ji-Hye Lee, Kang Rok Han, Art E.Cho, Cheolju Lee, Mi Sook Chung, Kyung Hyun Kim]]
+
<div class="pdbe-citations 4ztt" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Ferritin 3D structures|Ferritin 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli DH1]]
 +
[[Category: Large Structures]]
 +
[[Category: Cho AE]]
 +
[[Category: Chung MS]]
 +
[[Category: Chung YB]]
 +
[[Category: Gowda G]]
 +
[[Category: Han HR]]
 +
[[Category: Jung SW]]
 +
[[Category: Kim KH]]
 +
[[Category: Kim S]]
 +
[[Category: Lee C]]
 +
[[Category: Lee DB]]
 +
[[Category: Lee JH]]
 +
[[Category: Park YH]]
 +
[[Category: Seok JH]]

Current revision

Crystal structures of ferritin mutants reveal diferric-peroxo intermediates

PDB ID 4ztt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools